Hb_003371_140

Information

Type -
Description -
Location Contig3371: 92397-94796
Sequence    

Annotation

kegg
ID pop:POPTR_0001s23540g
description hypothetical protein
nr
ID XP_006369449.1
description hypothetical protein POPTR_0001s23540g, partial [Populus trichocarpa]
swissprot
ID Q39202
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2
trembl
ID U5GQY6
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s23540g PE=3 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35294: 95354-100384 , PASA_asmbl_35295: 95354-100384
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003371_140 0.0 - - hypothetical protein POPTR_0001s23540g, partial [Populus trichocarpa]
2 Hb_001863_450 0.1225703635 - - cryptochrome 1.2 [Populus tremula]
3 Hb_126103_010 0.1399117949 - - Phosphoprotein phosphatase [Theobroma cacao]
4 Hb_006501_170 0.1408588448 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
5 Hb_000589_220 0.1417453513 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
6 Hb_004466_070 0.1444752198 - - hypothetical protein RCOM_1447500 [Ricinus communis]
7 Hb_003142_090 0.1540182335 - - Kinase, putative isoform 2 [Theobroma cacao]
8 Hb_004166_010 0.1609872646 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
9 Hb_001410_010 0.1627744506 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
10 Hb_000107_440 0.1642338587 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
11 Hb_004218_160 0.1645928063 - - NBS-LRR type disease resistance protein [Medicago truncatula]
12 Hb_002218_070 0.1646372257 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
13 Hb_001921_010 0.1649694432 - - ATP-dependent RNA helicase, putative [Ricinus communis]
14 Hb_004648_100 0.1652081147 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
15 Hb_001879_050 0.1696097717 - - Disease resistance protein RFL1, putative [Ricinus communis]
16 Hb_001619_160 0.1702012743 transcription factor TF Family: ERF DREB1p [Hevea brasiliensis]
17 Hb_008175_030 0.1704308622 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
18 Hb_002571_010 0.1706301702 - - cationic amino acid transporter, putative [Ricinus communis]
19 Hb_000808_160 0.1726556852 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
20 Hb_000236_110 0.1745524129 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003371_140 Hb_003371_140 Hb_001863_450 Hb_001863_450 Hb_003371_140--Hb_001863_450 Hb_126103_010 Hb_126103_010 Hb_003371_140--Hb_126103_010 Hb_006501_170 Hb_006501_170 Hb_003371_140--Hb_006501_170 Hb_000589_220 Hb_000589_220 Hb_003371_140--Hb_000589_220 Hb_004466_070 Hb_004466_070 Hb_003371_140--Hb_004466_070 Hb_003142_090 Hb_003142_090 Hb_003371_140--Hb_003142_090 Hb_004166_010 Hb_004166_010 Hb_001863_450--Hb_004166_010 Hb_001863_450--Hb_004466_070 Hb_033642_070 Hb_033642_070 Hb_001863_450--Hb_033642_070 Hb_008253_040 Hb_008253_040 Hb_001863_450--Hb_008253_040 Hb_000172_080 Hb_000172_080 Hb_001863_450--Hb_000172_080 Hb_147873_010 Hb_147873_010 Hb_126103_010--Hb_147873_010 Hb_001230_020 Hb_001230_020 Hb_126103_010--Hb_001230_020 Hb_002078_090 Hb_002078_090 Hb_126103_010--Hb_002078_090 Hb_126103_010--Hb_001863_450 Hb_136660_010 Hb_136660_010 Hb_126103_010--Hb_136660_010 Hb_002518_270 Hb_002518_270 Hb_006501_170--Hb_002518_270 Hb_003106_210 Hb_003106_210 Hb_006501_170--Hb_003106_210 Hb_004218_160 Hb_004218_160 Hb_006501_170--Hb_004218_160 Hb_008948_080 Hb_008948_080 Hb_006501_170--Hb_008948_080 Hb_011214_140 Hb_011214_140 Hb_006501_170--Hb_011214_140 Hb_000236_110 Hb_000236_110 Hb_000589_220--Hb_000236_110 Hb_013749_060 Hb_013749_060 Hb_000589_220--Hb_013749_060 Hb_003894_100 Hb_003894_100 Hb_000589_220--Hb_003894_100 Hb_000778_020 Hb_000778_020 Hb_000589_220--Hb_000778_020 Hb_001410_010 Hb_001410_010 Hb_000589_220--Hb_001410_010 Hb_057079_020 Hb_057079_020 Hb_000589_220--Hb_057079_020 Hb_158696_010 Hb_158696_010 Hb_004466_070--Hb_158696_010 Hb_001248_110 Hb_001248_110 Hb_004466_070--Hb_001248_110 Hb_004466_070--Hb_004166_010 Hb_004466_070--Hb_033642_070 Hb_000067_030 Hb_000067_030 Hb_003142_090--Hb_000067_030 Hb_003142_090--Hb_006501_170 Hb_061350_010 Hb_061350_010 Hb_003142_090--Hb_061350_010 Hb_003142_090--Hb_002518_270 Hb_000126_040 Hb_000126_040 Hb_003142_090--Hb_000126_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.148026 2.24666 0.295219 0.418131 0.0152312 0.0839052
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0923523 0.0872039 0.0830495 0.831349 0.49383

CAGE analysis