Hb_000126_040

Information

Type -
Description -
Location Contig126: 82004-90546
Sequence    

Annotation

kegg
ID rcu:RCOM_1252090
description kinase, putative (EC:1.3.1.74 2.7.10.2)
nr
ID XP_002522276.1
description kinase, putative [Ricinus communis]
swissprot
ID C0LGG7
description Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2
trembl
ID B9S8F7
description Kinase, putative OS=Ricinus communis GN=RCOM_1252090 PE=4 SV=1
Gene Ontology
ID GO:0016301
description receptor-like kinase in flowers

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07933: 86407-86638 , PASA_asmbl_07934: 87909-88667
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000126_040 0.0 - - kinase, putative [Ricinus communis]
2 Hb_001230_020 0.1475528721 - - hypothetical protein POPTR_0001s31610g [Populus trichocarpa]
3 Hb_001863_450 0.1507095348 - - cryptochrome 1.2 [Populus tremula]
4 Hb_004166_010 0.1580431501 - - PREDICTED: uncharacterized protein LOC105638508 [Jatropha curcas]
5 Hb_000815_150 0.1635790685 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
6 Hb_001195_730 0.1652848227 - - PREDICTED: protein LYK5-like [Jatropha curcas]
7 Hb_000221_060 0.175645115 - - -
8 Hb_000333_120 0.1810172143 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
9 Hb_003142_090 0.1841318099 - - Kinase, putative isoform 2 [Theobroma cacao]
10 Hb_008253_040 0.1853052668 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
11 Hb_012812_010 0.1862595818 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Morus notabilis]
12 Hb_003371_140 0.1867316079 - - hypothetical protein POPTR_0001s23540g, partial [Populus trichocarpa]
13 Hb_004030_070 0.189560444 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
14 Hb_072276_010 0.195170803 - - PREDICTED: elongation of fatty acids protein 3-like [Jatropha curcas]
15 Hb_004466_070 0.1962170562 - - hypothetical protein RCOM_1447500 [Ricinus communis]
16 Hb_000809_080 0.1996250239 - - 50S ribosomal protein L25, putative [Ricinus communis]
17 Hb_001921_010 0.2048690824 - - ATP-dependent RNA helicase, putative [Ricinus communis]
18 Hb_003086_050 0.2072773379 - - calcium-dependent protein kinase, putative [Ricinus communis]
19 Hb_006501_170 0.2075009531 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
20 Hb_000856_410 0.2096008032 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_000126_040 Hb_000126_040 Hb_001230_020 Hb_001230_020 Hb_000126_040--Hb_001230_020 Hb_001863_450 Hb_001863_450 Hb_000126_040--Hb_001863_450 Hb_004166_010 Hb_004166_010 Hb_000126_040--Hb_004166_010 Hb_000815_150 Hb_000815_150 Hb_000126_040--Hb_000815_150 Hb_001195_730 Hb_001195_730 Hb_000126_040--Hb_001195_730 Hb_000221_060 Hb_000221_060 Hb_000126_040--Hb_000221_060 Hb_012812_010 Hb_012812_010 Hb_001230_020--Hb_012812_010 Hb_072276_010 Hb_072276_010 Hb_001230_020--Hb_072276_010 Hb_126103_010 Hb_126103_010 Hb_001230_020--Hb_126103_010 Hb_000032_020 Hb_000032_020 Hb_001230_020--Hb_000032_020 Hb_001230_020--Hb_001195_730 Hb_001863_450--Hb_004166_010 Hb_004466_070 Hb_004466_070 Hb_001863_450--Hb_004466_070 Hb_003371_140 Hb_003371_140 Hb_001863_450--Hb_003371_140 Hb_033642_070 Hb_033642_070 Hb_001863_450--Hb_033642_070 Hb_008253_040 Hb_008253_040 Hb_001863_450--Hb_008253_040 Hb_000172_080 Hb_000172_080 Hb_001863_450--Hb_000172_080 Hb_004166_010--Hb_000172_080 Hb_000061_100 Hb_000061_100 Hb_004166_010--Hb_000061_100 Hb_004166_010--Hb_008253_040 Hb_004166_010--Hb_004466_070 Hb_002571_010 Hb_002571_010 Hb_004166_010--Hb_002571_010 Hb_000333_120 Hb_000333_120 Hb_000815_150--Hb_000333_120 Hb_000815_150--Hb_001863_450 Hb_000815_150--Hb_004166_010 Hb_002995_030 Hb_002995_030 Hb_000815_150--Hb_002995_030 Hb_000815_150--Hb_001230_020 Hb_006501_170 Hb_006501_170 Hb_001195_730--Hb_006501_170 Hb_011716_050 Hb_011716_050 Hb_001195_730--Hb_011716_050 Hb_001195_730--Hb_012812_010 Hb_001230_030 Hb_001230_030 Hb_001195_730--Hb_001230_030 Hb_000803_060 Hb_000803_060 Hb_000221_060--Hb_000803_060 Hb_001489_120 Hb_001489_120 Hb_000221_060--Hb_001489_120 Hb_012787_040 Hb_012787_040 Hb_000221_060--Hb_012787_040 Hb_000071_140 Hb_000071_140 Hb_000221_060--Hb_000071_140 Hb_006414_020 Hb_006414_020 Hb_000221_060--Hb_006414_020 Hb_000103_400 Hb_000103_400 Hb_000221_060--Hb_000103_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0542968 5.44179 0.76587 0.475752 0.159319 0.250756
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.28745 0.477527 0.0240006 1.0722 1.41856

CAGE analysis