Hb_002995_030

Information

Type -
Description -
Location Contig2995: 41705-46906
Sequence    

Annotation

kegg
ID rcu:RCOM_0178710
description hypothetical protein
nr
ID XP_002533380.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8KG79
description Probable chaperone protein ClpB 1 OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / NBRC 103806 / TLS) GN=clpB1 PE=3 SV=1
trembl
ID B9T561
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0178710 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002995_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_006052_050 0.1584035428 - - hypothetical protein EUGRSUZ_A00568 [Eucalyptus grandis]
3 Hb_126103_010 0.1757603105 - - Phosphoprotein phosphatase [Theobroma cacao]
4 Hb_001227_040 0.185831741 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
5 Hb_000333_120 0.1918577551 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
6 Hb_010620_020 0.1983887701 - - receptor protein kinase, putative [Ricinus communis]
7 Hb_000815_150 0.2004536778 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
8 Hb_003086_050 0.2018442848 - - calcium-dependent protein kinase, putative [Ricinus communis]
9 Hb_001008_160 0.2065304082 - - -
10 Hb_005048_080 0.2104816696 - - PREDICTED: PAP-specific phosphatase HAL2-like [Jatropha curcas]
11 Hb_002687_150 0.2162579626 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
12 Hb_000243_310 0.217492652 - - lactoylglutathione lyase, putative [Ricinus communis]
13 Hb_001825_020 0.2177748784 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_002019_040 0.2186581684 - - hypothetical protein PRUPE_ppb016160mg, partial [Prunus persica]
15 Hb_001230_020 0.2200526971 - - hypothetical protein POPTR_0001s31610g [Populus trichocarpa]
16 Hb_002929_100 0.2201954059 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
17 Hb_008253_040 0.2230998182 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
18 Hb_000915_220 0.2255648563 - - Lactoylglutathione lyase / glyoxalase I family protein [Theobroma cacao]
19 Hb_129399_010 0.2256219632 - - cytochrome P450, putative [Ricinus communis]
20 Hb_006718_040 0.2257318486 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002995_030 Hb_002995_030 Hb_006052_050 Hb_006052_050 Hb_002995_030--Hb_006052_050 Hb_126103_010 Hb_126103_010 Hb_002995_030--Hb_126103_010 Hb_001227_040 Hb_001227_040 Hb_002995_030--Hb_001227_040 Hb_000333_120 Hb_000333_120 Hb_002995_030--Hb_000333_120 Hb_010620_020 Hb_010620_020 Hb_002995_030--Hb_010620_020 Hb_000815_150 Hb_000815_150 Hb_002995_030--Hb_000815_150 Hb_000915_220 Hb_000915_220 Hb_006052_050--Hb_000915_220 Hb_007590_040 Hb_007590_040 Hb_006052_050--Hb_007590_040 Hb_002929_100 Hb_002929_100 Hb_006052_050--Hb_002929_100 Hb_030873_010 Hb_030873_010 Hb_006052_050--Hb_030873_010 Hb_000119_050 Hb_000119_050 Hb_006052_050--Hb_000119_050 Hb_003371_140 Hb_003371_140 Hb_126103_010--Hb_003371_140 Hb_147873_010 Hb_147873_010 Hb_126103_010--Hb_147873_010 Hb_001230_020 Hb_001230_020 Hb_126103_010--Hb_001230_020 Hb_002078_090 Hb_002078_090 Hb_126103_010--Hb_002078_090 Hb_001863_450 Hb_001863_450 Hb_126103_010--Hb_001863_450 Hb_136660_010 Hb_136660_010 Hb_126103_010--Hb_136660_010 Hb_001227_040--Hb_000333_120 Hb_008195_020 Hb_008195_020 Hb_001227_040--Hb_008195_020 Hb_000465_380 Hb_000465_380 Hb_001227_040--Hb_000465_380 Hb_108055_010 Hb_108055_010 Hb_001227_040--Hb_108055_010 Hb_002232_050 Hb_002232_050 Hb_001227_040--Hb_002232_050 Hb_129399_010 Hb_129399_010 Hb_001227_040--Hb_129399_010 Hb_000333_120--Hb_108055_010 Hb_000705_130 Hb_000705_130 Hb_000333_120--Hb_000705_130 Hb_015882_020 Hb_015882_020 Hb_000333_120--Hb_015882_020 Hb_000333_120--Hb_000465_380 Hb_010962_030 Hb_010962_030 Hb_000333_120--Hb_010962_030 Hb_010921_060 Hb_010921_060 Hb_000333_120--Hb_010921_060 Hb_010620_020--Hb_129399_010 Hb_000146_110 Hb_000146_110 Hb_010620_020--Hb_000146_110 Hb_000003_620 Hb_000003_620 Hb_010620_020--Hb_000003_620 Hb_009778_030 Hb_009778_030 Hb_010620_020--Hb_009778_030 Hb_001363_030 Hb_001363_030 Hb_010620_020--Hb_001363_030 Hb_000111_130 Hb_000111_130 Hb_010620_020--Hb_000111_130 Hb_000126_040 Hb_000126_040 Hb_000815_150--Hb_000126_040 Hb_000815_150--Hb_000333_120 Hb_000815_150--Hb_001863_450 Hb_004166_010 Hb_004166_010 Hb_000815_150--Hb_004166_010 Hb_000815_150--Hb_001230_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.241454 8.79397 0.175669 0.196999 0.0537858 0.1789
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.12641 0.0994761 0.275001 1.42451 2.17077

CAGE analysis