Hb_136660_010

Information

Type -
Description -
Location Contig136660: 882-1540
Sequence    

Annotation

kegg
ID rcu:RCOM_1080820
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002514939.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9SHI3
description Receptor-like protein 2 OS=Arabidopsis thaliana GN=RLP2 PE=2 SV=1
trembl
ID B9RMH0
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1080820 PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_136660_010 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_147873_010 0.1049162385 - - PREDICTED: uncharacterized protein LOC102595311 [Solanum tuberosum]
3 Hb_060909_010 0.1585309684 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
4 Hb_001408_150 0.1628001111 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
5 Hb_126103_010 0.1641776157 - - Phosphoprotein phosphatase [Theobroma cacao]
6 Hb_001921_010 0.1707470608 - - ATP-dependent RNA helicase, putative [Ricinus communis]
7 Hb_012018_010 0.171102032 - - hypothetical protein MIMGU_mgv1a0024251mg, partial [Erythranthe guttata]
8 Hb_002739_070 0.1754092145 - - hypothetical protein B456_002G169900 [Gossypium raimondii]
9 Hb_003371_140 0.179671277 - - hypothetical protein POPTR_0001s23540g, partial [Populus trichocarpa]
10 Hb_002609_150 0.183953733 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
11 Hb_000233_100 0.1864688511 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
12 Hb_002475_130 0.1870821908 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4 [Jatropha curcas]
13 Hb_010080_020 0.1922231228 - - PREDICTED: uncharacterized protein LOC105635249 [Jatropha curcas]
14 Hb_011310_200 0.1943776331 - - grr1, plant, putative [Ricinus communis]
15 Hb_001863_450 0.1944292909 - - cryptochrome 1.2 [Populus tremula]
16 Hb_158696_010 0.196562474 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
17 Hb_000544_020 0.1968806694 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
18 Hb_033642_070 0.1996844868 - - PREDICTED: oligopeptide transporter 7-like [Jatropha curcas]
19 Hb_000532_130 0.2004635118 - - hypothetical protein [Anabaena sp. PCC 7108]
20 Hb_001608_030 0.2009123125 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]

Gene co-expression network

sample Hb_136660_010 Hb_136660_010 Hb_147873_010 Hb_147873_010 Hb_136660_010--Hb_147873_010 Hb_060909_010 Hb_060909_010 Hb_136660_010--Hb_060909_010 Hb_001408_150 Hb_001408_150 Hb_136660_010--Hb_001408_150 Hb_126103_010 Hb_126103_010 Hb_136660_010--Hb_126103_010 Hb_001921_010 Hb_001921_010 Hb_136660_010--Hb_001921_010 Hb_012018_010 Hb_012018_010 Hb_136660_010--Hb_012018_010 Hb_147873_010--Hb_126103_010 Hb_147873_010--Hb_060909_010 Hb_002078_090 Hb_002078_090 Hb_147873_010--Hb_002078_090 Hb_002475_130 Hb_002475_130 Hb_147873_010--Hb_002475_130 Hb_000233_100 Hb_000233_100 Hb_147873_010--Hb_000233_100 Hb_060909_010--Hb_001408_150 Hb_000544_020 Hb_000544_020 Hb_060909_010--Hb_000544_020 Hb_060909_010--Hb_000233_100 Hb_004648_100 Hb_004648_100 Hb_060909_010--Hb_004648_100 Hb_008226_100 Hb_008226_100 Hb_060909_010--Hb_008226_100 Hb_000532_130 Hb_000532_130 Hb_060909_010--Hb_000532_130 Hb_000778_020 Hb_000778_020 Hb_001408_150--Hb_000778_020 Hb_008175_030 Hb_008175_030 Hb_001408_150--Hb_008175_030 Hb_002739_060 Hb_002739_060 Hb_001408_150--Hb_002739_060 Hb_001408_150--Hb_000532_130 Hb_000197_230 Hb_000197_230 Hb_001408_150--Hb_000197_230 Hb_003371_140 Hb_003371_140 Hb_126103_010--Hb_003371_140 Hb_001230_020 Hb_001230_020 Hb_126103_010--Hb_001230_020 Hb_126103_010--Hb_002078_090 Hb_001863_450 Hb_001863_450 Hb_126103_010--Hb_001863_450 Hb_010080_020 Hb_010080_020 Hb_001921_010--Hb_010080_020 Hb_001921_010--Hb_002475_130 Hb_002218_070 Hb_002218_070 Hb_001921_010--Hb_002218_070 Hb_001921_010--Hb_008175_030 Hb_000819_010 Hb_000819_010 Hb_001921_010--Hb_000819_010 Hb_000333_120 Hb_000333_120 Hb_001921_010--Hb_000333_120 Hb_012018_010--Hb_010080_020 Hb_012018_010--Hb_001921_010 Hb_001608_030 Hb_001608_030 Hb_012018_010--Hb_001608_030 Hb_006414_020 Hb_006414_020 Hb_012018_010--Hb_006414_020 Hb_000107_440 Hb_000107_440 Hb_012018_010--Hb_000107_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.334708 3.28893 0.501382 0.688554 0.145502 0.119791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.367975 1.04528 0.81522

CAGE analysis