Hb_010080_020

Information

Type -
Description -
Location Contig10080: 22145-24053
Sequence    

Annotation

kegg
ID rcu:RCOM_1600700
description hypothetical protein
nr
ID XP_012073675.1
description PREDICTED: uncharacterized protein LOC105635249 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KL37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08118 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00501: 21978-24053
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010080_020 0.0 - - PREDICTED: uncharacterized protein LOC105635249 [Jatropha curcas]
2 Hb_012018_010 0.0948729379 - - hypothetical protein MIMGU_mgv1a0024251mg, partial [Erythranthe guttata]
3 Hb_001921_010 0.1229555058 - - ATP-dependent RNA helicase, putative [Ricinus communis]
4 Hb_073119_010 0.129247829 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
5 Hb_001608_030 0.1321495301 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
6 Hb_012702_010 0.1411204835 - - PREDICTED: TMV resistance protein N-like isoform X4 [Vitis vinifera]
7 Hb_021596_070 0.1497649624 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
8 Hb_000397_090 0.1511406042 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
9 Hb_001879_050 0.1527723534 - - Disease resistance protein RFL1, putative [Ricinus communis]
10 Hb_000003_420 0.1543119887 - - o-methyltransferase, putative [Ricinus communis]
11 Hb_004466_070 0.1554410798 - - hypothetical protein RCOM_1447500 [Ricinus communis]
12 Hb_002272_140 0.1586016067 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
13 Hb_002609_150 0.1620370519 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
14 Hb_010962_030 0.1638130144 - - kinase, putative [Ricinus communis]
15 Hb_003556_070 0.1658888441 - - metal ion binding protein, putative [Ricinus communis]
16 Hb_000395_030 0.1664472736 - - oligopeptide transporter, putative [Ricinus communis]
17 Hb_001345_030 0.1672141196 - - hypothetical protein POPTR_0007s10390g, partial [Populus trichocarpa]
18 Hb_002219_090 0.1698490292 - - protein kinase atmrk1, putative [Ricinus communis]
19 Hb_000103_400 0.1730178233 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
20 Hb_001248_110 0.1752239514 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]

Gene co-expression network

sample Hb_010080_020 Hb_010080_020 Hb_012018_010 Hb_012018_010 Hb_010080_020--Hb_012018_010 Hb_001921_010 Hb_001921_010 Hb_010080_020--Hb_001921_010 Hb_073119_010 Hb_073119_010 Hb_010080_020--Hb_073119_010 Hb_001608_030 Hb_001608_030 Hb_010080_020--Hb_001608_030 Hb_012702_010 Hb_012702_010 Hb_010080_020--Hb_012702_010 Hb_021596_070 Hb_021596_070 Hb_010080_020--Hb_021596_070 Hb_012018_010--Hb_001921_010 Hb_012018_010--Hb_001608_030 Hb_006414_020 Hb_006414_020 Hb_012018_010--Hb_006414_020 Hb_136660_010 Hb_136660_010 Hb_012018_010--Hb_136660_010 Hb_000107_440 Hb_000107_440 Hb_012018_010--Hb_000107_440 Hb_002475_130 Hb_002475_130 Hb_001921_010--Hb_002475_130 Hb_002218_070 Hb_002218_070 Hb_001921_010--Hb_002218_070 Hb_008175_030 Hb_008175_030 Hb_001921_010--Hb_008175_030 Hb_000819_010 Hb_000819_010 Hb_001921_010--Hb_000819_010 Hb_000333_120 Hb_000333_120 Hb_001921_010--Hb_000333_120 Hb_003556_070 Hb_003556_070 Hb_073119_010--Hb_003556_070 Hb_000098_250 Hb_000098_250 Hb_073119_010--Hb_000098_250 Hb_073119_010--Hb_000819_010 Hb_000094_010 Hb_000094_010 Hb_073119_010--Hb_000094_010 Hb_017604_020 Hb_017604_020 Hb_073119_010--Hb_017604_020 Hb_000003_420 Hb_000003_420 Hb_073119_010--Hb_000003_420 Hb_007137_030 Hb_007137_030 Hb_001608_030--Hb_007137_030 Hb_093177_010 Hb_093177_010 Hb_001608_030--Hb_093177_010 Hb_158696_010 Hb_158696_010 Hb_001608_030--Hb_158696_010 Hb_000007_160 Hb_000007_160 Hb_001608_030--Hb_000007_160 Hb_000984_100 Hb_000984_100 Hb_001608_030--Hb_000984_100 Hb_019961_010 Hb_019961_010 Hb_012702_010--Hb_019961_010 Hb_002272_140 Hb_002272_140 Hb_012702_010--Hb_002272_140 Hb_138628_010 Hb_138628_010 Hb_012702_010--Hb_138628_010 Hb_000172_300 Hb_000172_300 Hb_012702_010--Hb_000172_300 Hb_004531_010 Hb_004531_010 Hb_012702_010--Hb_004531_010 Hb_011054_030 Hb_011054_030 Hb_012702_010--Hb_011054_030 Hb_008667_020 Hb_008667_020 Hb_021596_070--Hb_008667_020 Hb_007433_020 Hb_007433_020 Hb_021596_070--Hb_007433_020 Hb_010962_030 Hb_010962_030 Hb_021596_070--Hb_010962_030 Hb_021596_070--Hb_011054_030 Hb_007371_020 Hb_007371_020 Hb_021596_070--Hb_007371_020 Hb_111985_060 Hb_111985_060 Hb_021596_070--Hb_111985_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.378695 29.4284 3.99986 4.17081 1.21043 0.707787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0870091 0.114091 0.773511 7.63522 2.34519

CAGE analysis