Hb_093177_010

Information

Type -
Description -
Location Contig93177: 5821-9905
Sequence    

Annotation

kegg
ID tcc:TCM_046051
description Phosphoprotein phosphatase
nr
ID XP_007099575.1
description Phosphoprotein phosphatase [Theobroma cacao]
swissprot
ID -
description -
trembl
ID S1RWE9
description Phosphoprotein phosphatase OS=Theobroma cacao GN=TCM_046051 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62859: 6819-7834 , PASA_asmbl_62860: 8081-8824
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_093177_010 0.0 - - Phosphoprotein phosphatase [Theobroma cacao]
2 Hb_004106_010 0.0814381083 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
3 Hb_158696_010 0.1151330887 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
4 Hb_001608_030 0.1207131534 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
5 Hb_007137_030 0.1273274256 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
6 Hb_115158_010 0.1310474087 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_001662_170 0.1456092031 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
8 Hb_003216_050 0.1544289793 - - PREDICTED: OBERON-like protein [Jatropha curcas]
9 Hb_012787_040 0.1614578739 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
10 Hb_098160_010 0.1628970594 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
11 Hb_008103_100 0.1677092747 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]
12 Hb_003637_020 0.1695405789 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005000_050 0.1706706155 - - PREDICTED: tetraspanin-2 [Jatropha curcas]
14 Hb_000236_120 0.1717935994 - - -
15 Hb_003752_120 0.1735958749 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
16 Hb_042553_010 0.1749629364 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
17 Hb_001053_200 0.1754216048 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
18 Hb_005568_130 0.1766720951 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
19 Hb_000544_020 0.1771977865 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
20 Hb_002849_110 0.1783138253 - - hypothetical protein JCGZ_14362 [Jatropha curcas]

Gene co-expression network

sample Hb_093177_010 Hb_093177_010 Hb_004106_010 Hb_004106_010 Hb_093177_010--Hb_004106_010 Hb_158696_010 Hb_158696_010 Hb_093177_010--Hb_158696_010 Hb_001608_030 Hb_001608_030 Hb_093177_010--Hb_001608_030 Hb_007137_030 Hb_007137_030 Hb_093177_010--Hb_007137_030 Hb_115158_010 Hb_115158_010 Hb_093177_010--Hb_115158_010 Hb_001662_170 Hb_001662_170 Hb_093177_010--Hb_001662_170 Hb_004106_010--Hb_001662_170 Hb_004106_010--Hb_158696_010 Hb_012787_040 Hb_012787_040 Hb_004106_010--Hb_012787_040 Hb_001053_200 Hb_001053_200 Hb_004106_010--Hb_001053_200 Hb_008103_100 Hb_008103_100 Hb_004106_010--Hb_008103_100 Hb_158696_010--Hb_012787_040 Hb_158696_010--Hb_001662_170 Hb_003752_120 Hb_003752_120 Hb_158696_010--Hb_003752_120 Hb_004631_110 Hb_004631_110 Hb_158696_010--Hb_004631_110 Hb_001608_030--Hb_007137_030 Hb_001608_030--Hb_158696_010 Hb_010080_020 Hb_010080_020 Hb_001608_030--Hb_010080_020 Hb_000007_160 Hb_000007_160 Hb_001608_030--Hb_000007_160 Hb_000984_100 Hb_000984_100 Hb_001608_030--Hb_000984_100 Hb_042553_010 Hb_042553_010 Hb_007137_030--Hb_042553_010 Hb_133508_010 Hb_133508_010 Hb_007137_030--Hb_133508_010 Hb_102100_010 Hb_102100_010 Hb_007137_030--Hb_102100_010 Hb_007137_030--Hb_115158_010 Hb_115158_010--Hb_001608_030 Hb_012760_060 Hb_012760_060 Hb_115158_010--Hb_012760_060 Hb_115158_010--Hb_004106_010 Hb_000236_120 Hb_000236_120 Hb_115158_010--Hb_000236_120 Hb_001662_170--Hb_012787_040 Hb_004032_310 Hb_004032_310 Hb_001662_170--Hb_004032_310 Hb_001662_170--Hb_001053_200 Hb_001662_170--Hb_003752_120 Hb_011360_090 Hb_011360_090 Hb_001662_170--Hb_011360_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.49636 24.2271 4.52112 11.1546 3.48374 2.07935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.20574 0.107921 0.409176 3.88611 3.49597

CAGE analysis