Hb_008103_100

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig8103: 74360-77062
Sequence    

Annotation

kegg
ID rcu:RCOM_1047690
description leucine-rich repeat-containing protein 2, lrrc2, putative (EC:3.1.3.16)
nr
ID XP_012076971.1
description PREDICTED: disease resistance protein RPS2 [Jatropha curcas]
swissprot
ID Q42484
description Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1
trembl
ID A0A067KNK4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07436 PE=4 SV=1
Gene Ontology
ID GO:0005515
description disease resistance protein rps2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59231: 73084-73823 , PASA_asmbl_59232: 74238-74362 , PASA_asmbl_59233: 74658-75077 , PASA_asmbl_59235: 76079-76509
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008103_100 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]
2 Hb_001053_200 0.0868059343 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
3 Hb_001662_170 0.1070206852 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
4 Hb_012787_040 0.1165411729 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
5 Hb_004106_010 0.1184499398 - - PREDICTED: protein GPR107 isoform X1 [Jatropha curcas]
6 Hb_003216_050 0.1203437827 - - PREDICTED: OBERON-like protein [Jatropha curcas]
7 Hb_000803_060 0.1279908477 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
8 Hb_000610_060 0.1283568792 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
9 Hb_158696_010 0.1295928259 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
10 Hb_004032_310 0.1302865313 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
11 Hb_002910_010 0.1307278333 - - PREDICTED: uncharacterized protein LOC105635519 [Jatropha curcas]
12 Hb_003752_120 0.1326042886 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
13 Hb_002073_020 0.1332390124 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
14 Hb_006414_020 0.1350859656 transcription factor TF Family: MYB -
15 Hb_011360_090 0.1361995967 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
16 Hb_001951_240 0.1385849146 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
17 Hb_000649_300 0.1418007911 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
18 Hb_004712_160 0.1428854456 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
19 Hb_000613_220 0.1441701414 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
20 Hb_001489_120 0.1456401612 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_008103_100 Hb_008103_100 Hb_001053_200 Hb_001053_200 Hb_008103_100--Hb_001053_200 Hb_001662_170 Hb_001662_170 Hb_008103_100--Hb_001662_170 Hb_012787_040 Hb_012787_040 Hb_008103_100--Hb_012787_040 Hb_004106_010 Hb_004106_010 Hb_008103_100--Hb_004106_010 Hb_003216_050 Hb_003216_050 Hb_008103_100--Hb_003216_050 Hb_000803_060 Hb_000803_060 Hb_008103_100--Hb_000803_060 Hb_001053_200--Hb_001662_170 Hb_001951_240 Hb_001951_240 Hb_001053_200--Hb_001951_240 Hb_000649_300 Hb_000649_300 Hb_001053_200--Hb_000649_300 Hb_005496_160 Hb_005496_160 Hb_001053_200--Hb_005496_160 Hb_004032_310 Hb_004032_310 Hb_001053_200--Hb_004032_310 Hb_001662_170--Hb_004106_010 Hb_001662_170--Hb_012787_040 Hb_001662_170--Hb_004032_310 Hb_003752_120 Hb_003752_120 Hb_001662_170--Hb_003752_120 Hb_011360_090 Hb_011360_090 Hb_001662_170--Hb_011360_090 Hb_012787_040--Hb_003752_120 Hb_012787_040--Hb_000803_060 Hb_012787_040--Hb_011360_090 Hb_158696_010 Hb_158696_010 Hb_012787_040--Hb_158696_010 Hb_012787_040--Hb_004106_010 Hb_093177_010 Hb_093177_010 Hb_004106_010--Hb_093177_010 Hb_004106_010--Hb_158696_010 Hb_004106_010--Hb_001053_200 Hb_005568_130 Hb_005568_130 Hb_003216_050--Hb_005568_130 Hb_003216_050--Hb_001662_170 Hb_003216_050--Hb_001053_200 Hb_001409_050 Hb_001409_050 Hb_003216_050--Hb_001409_050 Hb_003216_050--Hb_000649_300 Hb_006414_020 Hb_006414_020 Hb_000803_060--Hb_006414_020 Hb_001258_150 Hb_001258_150 Hb_000803_060--Hb_001258_150 Hb_001489_120 Hb_001489_120 Hb_000803_060--Hb_001489_120 Hb_000803_060--Hb_003752_120 Hb_000803_060--Hb_004032_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.49824 8.56282 2.8041 2.23902 0.834712 0.512871
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.129897 0.52386 0.17077 1.78501 1.46908

CAGE analysis