Hb_001409_050

Information

Type -
Description -
Location Contig1409: 92336-97386
Sequence    

Annotation

kegg
ID rcu:RCOM_1494410
description serine-threonine protein kinase, plant-type, putative (EC:2.7.10.2)
nr
ID XP_002516047.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q1PEM5
description Proline-rich receptor-like protein kinase PERK3 OS=Arabidopsis thaliana GN=PERK3 PE=2 SV=2
trembl
ID B9RQM8
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_1494410 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11068: 96666-96827
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001409_050 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_005724_050 0.1004003851 - - -
3 Hb_001053_200 0.1233715557 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
4 Hb_003216_050 0.1275098766 - - PREDICTED: OBERON-like protein [Jatropha curcas]
5 Hb_000732_230 0.1378789675 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
6 Hb_001951_240 0.1386929024 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
7 Hb_000008_430 0.1464381433 - - PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1 [Jatropha curcas]
8 Hb_008103_100 0.1509390083 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2 [Jatropha curcas]
9 Hb_000649_300 0.151593514 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
10 Hb_001079_030 0.1527201746 - - PREDICTED: splicing factor U2af small subunit B-like [Jatropha curcas]
11 Hb_020178_050 0.1551213544 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
12 Hb_000613_220 0.1553973355 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
13 Hb_000362_090 0.1554482996 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
14 Hb_115513_040 0.1561901431 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002874_170 0.1563037326 - - PREDICTED: L-arabinokinase-like isoform X3 [Jatropha curcas]
16 Hb_004324_060 0.157850943 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
17 Hb_002609_190 0.1579845932 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
18 Hb_002073_020 0.1587167406 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
19 Hb_001205_180 0.1599095398 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
20 Hb_004800_130 0.1648187217 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]

Gene co-expression network

sample Hb_001409_050 Hb_001409_050 Hb_005724_050 Hb_005724_050 Hb_001409_050--Hb_005724_050 Hb_001053_200 Hb_001053_200 Hb_001409_050--Hb_001053_200 Hb_003216_050 Hb_003216_050 Hb_001409_050--Hb_003216_050 Hb_000732_230 Hb_000732_230 Hb_001409_050--Hb_000732_230 Hb_001951_240 Hb_001951_240 Hb_001409_050--Hb_001951_240 Hb_000008_430 Hb_000008_430 Hb_001409_050--Hb_000008_430 Hb_005724_050--Hb_000008_430 Hb_005724_050--Hb_000732_230 Hb_001205_180 Hb_001205_180 Hb_005724_050--Hb_001205_180 Hb_005724_050--Hb_001951_240 Hb_002609_190 Hb_002609_190 Hb_005724_050--Hb_002609_190 Hb_008103_100 Hb_008103_100 Hb_001053_200--Hb_008103_100 Hb_001662_170 Hb_001662_170 Hb_001053_200--Hb_001662_170 Hb_001053_200--Hb_001951_240 Hb_000649_300 Hb_000649_300 Hb_001053_200--Hb_000649_300 Hb_005496_160 Hb_005496_160 Hb_001053_200--Hb_005496_160 Hb_004032_310 Hb_004032_310 Hb_001053_200--Hb_004032_310 Hb_005568_130 Hb_005568_130 Hb_003216_050--Hb_005568_130 Hb_003216_050--Hb_001662_170 Hb_003216_050--Hb_001053_200 Hb_003216_050--Hb_008103_100 Hb_003216_050--Hb_000649_300 Hb_000950_040 Hb_000950_040 Hb_000732_230--Hb_000950_040 Hb_115513_040 Hb_115513_040 Hb_000732_230--Hb_115513_040 Hb_001408_020 Hb_001408_020 Hb_000732_230--Hb_001408_020 Hb_000732_230--Hb_001951_240 Hb_000227_320 Hb_000227_320 Hb_000732_230--Hb_000227_320 Hb_003050_150 Hb_003050_150 Hb_000732_230--Hb_003050_150 Hb_172421_010 Hb_172421_010 Hb_001951_240--Hb_172421_010 Hb_001951_240--Hb_000649_300 Hb_002804_010 Hb_002804_010 Hb_001951_240--Hb_002804_010 Hb_002073_020 Hb_002073_020 Hb_001951_240--Hb_002073_020 Hb_004032_090 Hb_004032_090 Hb_000008_430--Hb_004032_090 Hb_001294_040 Hb_001294_040 Hb_000008_430--Hb_001294_040 Hb_007290_070 Hb_007290_070 Hb_000008_430--Hb_007290_070 Hb_005539_100 Hb_005539_100 Hb_000008_430--Hb_005539_100 Hb_000008_430--Hb_001205_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.03817 26.0626 12.42 9.04619 6.39882 3.17866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.307502 0.322219 0.281355 10.3132 6.69249

CAGE analysis