Hb_005496_160

Information

Type -
Description -
Location Contig5496: 136919-143345
Sequence    

Annotation

kegg
ID pop:POPTR_0014s01690g
description POPTRDRAFT_730788; azetidine-2-carboxylic acid resistant 1 family protein
nr
ID XP_012068228.1
description PREDICTED: calcium-transporting ATPase 1, chloroplastic [Jatropha curcas]
swissprot
ID Q37145
description Calcium-transporting ATPase 1, chloroplastic OS=Arabidopsis thaliana GN=ACA1 PE=1 SV=3
trembl
ID A0A067KZL9
description Calcium-transporting ATPase OS=Jatropha curcas GN=JCGZ_16034 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48229: 136684-143346 , PASA_asmbl_48230: 136684-143346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005496_160 0.0 - - PREDICTED: calcium-transporting ATPase 1, chloroplastic [Jatropha curcas]
2 Hb_000649_300 0.0879816987 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
3 Hb_002154_020 0.1033924012 - - protein with unknown function [Ricinus communis]
4 Hb_007849_050 0.108579735 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
5 Hb_001053_200 0.1094767805 - - PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
6 Hb_007007_080 0.110954935 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001951_240 0.1144642625 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
8 Hb_003752_120 0.1163856455 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
9 Hb_007031_040 0.1166571464 transcription factor TF Family: bZIP PREDICTED: bZIP transcription factor 17-like [Jatropha curcas]
10 Hb_000163_230 0.1168671999 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
11 Hb_000421_110 0.1172749129 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
12 Hb_002073_020 0.1190198523 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
13 Hb_002387_040 0.1196195058 - - protein transporter, putative [Ricinus communis]
14 Hb_000270_110 0.1197841991 - - PREDICTED: calcium-dependent protein kinase 10 [Jatropha curcas]
15 Hb_172421_010 0.122055806 - - cysteine protease [Hevea brasiliensis]
16 Hb_000454_140 0.1239600499 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
17 Hb_001133_090 0.1264616536 - - hypothetical protein POPTR_0012s02680g [Populus trichocarpa]
18 Hb_004032_310 0.1271289907 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
19 Hb_032202_050 0.127407826 transcription factor TF Family: TCP conserved hypothetical protein [Ricinus communis]
20 Hb_002804_010 0.1276209644 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]

Gene co-expression network

sample Hb_005496_160 Hb_005496_160 Hb_000649_300 Hb_000649_300 Hb_005496_160--Hb_000649_300 Hb_002154_020 Hb_002154_020 Hb_005496_160--Hb_002154_020 Hb_007849_050 Hb_007849_050 Hb_005496_160--Hb_007849_050 Hb_001053_200 Hb_001053_200 Hb_005496_160--Hb_001053_200 Hb_007007_080 Hb_007007_080 Hb_005496_160--Hb_007007_080 Hb_001951_240 Hb_001951_240 Hb_005496_160--Hb_001951_240 Hb_002874_170 Hb_002874_170 Hb_000649_300--Hb_002874_170 Hb_000649_300--Hb_001951_240 Hb_000649_300--Hb_001053_200 Hb_002910_010 Hb_002910_010 Hb_000649_300--Hb_002910_010 Hb_002073_020 Hb_002073_020 Hb_000649_300--Hb_002073_020 Hb_002387_040 Hb_002387_040 Hb_002154_020--Hb_002387_040 Hb_002249_050 Hb_002249_050 Hb_002154_020--Hb_002249_050 Hb_002477_120 Hb_002477_120 Hb_002154_020--Hb_002477_120 Hb_002400_160 Hb_002400_160 Hb_002154_020--Hb_002400_160 Hb_004032_310 Hb_004032_310 Hb_002154_020--Hb_004032_310 Hb_019863_060 Hb_019863_060 Hb_002154_020--Hb_019863_060 Hb_000454_140 Hb_000454_140 Hb_007849_050--Hb_000454_140 Hb_003001_070 Hb_003001_070 Hb_007849_050--Hb_003001_070 Hb_012305_140 Hb_012305_140 Hb_007849_050--Hb_012305_140 Hb_005694_130 Hb_005694_130 Hb_007849_050--Hb_005694_130 Hb_000163_230 Hb_000163_230 Hb_007849_050--Hb_000163_230 Hb_004324_060 Hb_004324_060 Hb_007849_050--Hb_004324_060 Hb_008103_100 Hb_008103_100 Hb_001053_200--Hb_008103_100 Hb_001662_170 Hb_001662_170 Hb_001053_200--Hb_001662_170 Hb_001053_200--Hb_001951_240 Hb_001053_200--Hb_004032_310 Hb_000069_330 Hb_000069_330 Hb_007007_080--Hb_000069_330 Hb_003224_030 Hb_003224_030 Hb_007007_080--Hb_003224_030 Hb_003752_120 Hb_003752_120 Hb_007007_080--Hb_003752_120 Hb_007007_080--Hb_002477_120 Hb_007007_080--Hb_002154_020 Hb_000732_230 Hb_000732_230 Hb_001951_240--Hb_000732_230 Hb_172421_010 Hb_172421_010 Hb_001951_240--Hb_172421_010 Hb_002804_010 Hb_002804_010 Hb_001951_240--Hb_002804_010 Hb_001951_240--Hb_002073_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.67161 47.2805 28.2907 17.6364 4.18411 7.63187
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.30503 2.36755 5.08692 12.6795 11.7533

CAGE analysis