Hb_138628_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig138628: 13-2073
Sequence    

Annotation

kegg
ID cit:102623211
description putative disease resistance protein RGA1-like
nr
ID XP_012065986.1
description PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067LG32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_27058 PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rga3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10594: 26-334 , PASA_asmbl_10595: 1912-2080
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138628_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
2 Hb_012702_010 0.1056412374 - - PREDICTED: TMV resistance protein N-like isoform X4 [Vitis vinifera]
3 Hb_019961_010 0.1111401882 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
4 Hb_002272_140 0.1140804547 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
5 Hb_181824_010 0.128954387 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_000003_420 0.1344189961 - - o-methyltransferase, putative [Ricinus communis]
7 Hb_005568_060 0.1417610176 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]
8 Hb_007433_020 0.1432909392 - - hypothetical protein VITISV_005320 [Vitis vinifera]
9 Hb_001846_040 0.1453634236 - - cytochrome P450, putative [Ricinus communis]
10 Hb_000133_060 0.1458563778 - - PREDICTED: protein YLS9-like [Jatropha curcas]
11 Hb_000103_400 0.1491331775 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
12 Hb_000363_110 0.1540555953 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
13 Hb_009247_020 0.1551746959 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
14 Hb_000473_080 0.1573782141 - - PREDICTED: lipase-like PAD4 [Populus euphratica]
15 Hb_021596_070 0.1592515139 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
16 Hb_016404_010 0.1594920733 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
17 Hb_008667_020 0.1601430872 - - PREDICTED: uncharacterized protein LOC101299609 [Fragaria vesca subsp. vesca]
18 Hb_127400_010 0.1614478804 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
19 Hb_002284_020 0.1651923722 - - PREDICTED: probable inorganic phosphate transporter 1-9 [Jatropha curcas]
20 Hb_000397_090 0.1653867899 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]

Gene co-expression network

sample Hb_138628_010 Hb_138628_010 Hb_012702_010 Hb_012702_010 Hb_138628_010--Hb_012702_010 Hb_019961_010 Hb_019961_010 Hb_138628_010--Hb_019961_010 Hb_002272_140 Hb_002272_140 Hb_138628_010--Hb_002272_140 Hb_181824_010 Hb_181824_010 Hb_138628_010--Hb_181824_010 Hb_000003_420 Hb_000003_420 Hb_138628_010--Hb_000003_420 Hb_005568_060 Hb_005568_060 Hb_138628_010--Hb_005568_060 Hb_012702_010--Hb_019961_010 Hb_012702_010--Hb_002272_140 Hb_000172_300 Hb_000172_300 Hb_012702_010--Hb_000172_300 Hb_004531_010 Hb_004531_010 Hb_012702_010--Hb_004531_010 Hb_011054_030 Hb_011054_030 Hb_012702_010--Hb_011054_030 Hb_000133_060 Hb_000133_060 Hb_019961_010--Hb_000133_060 Hb_019961_010--Hb_002272_140 Hb_007433_020 Hb_007433_020 Hb_019961_010--Hb_007433_020 Hb_008667_020 Hb_008667_020 Hb_019961_010--Hb_008667_020 Hb_000103_400 Hb_000103_400 Hb_002272_140--Hb_000103_400 Hb_002284_020 Hb_002284_020 Hb_002272_140--Hb_002284_020 Hb_000473_080 Hb_000473_080 Hb_002272_140--Hb_000473_080 Hb_181824_010--Hb_005568_060 Hb_033149_020 Hb_033149_020 Hb_181824_010--Hb_033149_020 Hb_001846_040 Hb_001846_040 Hb_181824_010--Hb_001846_040 Hb_000045_140 Hb_000045_140 Hb_181824_010--Hb_000045_140 Hb_016404_010 Hb_016404_010 Hb_181824_010--Hb_016404_010 Hb_000397_090 Hb_000397_090 Hb_000003_420--Hb_000397_090 Hb_000003_420--Hb_000473_080 Hb_029866_050 Hb_029866_050 Hb_000003_420--Hb_029866_050 Hb_073119_010 Hb_073119_010 Hb_000003_420--Hb_073119_010 Hb_006698_020 Hb_006698_020 Hb_000003_420--Hb_006698_020 Hb_000363_110 Hb_000363_110 Hb_000003_420--Hb_000363_110 Hb_005568_060--Hb_001846_040 Hb_004787_100 Hb_004787_100 Hb_005568_060--Hb_004787_100 Hb_005568_060--Hb_016404_010 Hb_009247_020 Hb_009247_020 Hb_005568_060--Hb_009247_020 Hb_006483_050 Hb_006483_050 Hb_005568_060--Hb_006483_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.840011 35.8056 7.33633 4.82658 0.172759 0.930718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.196468 0.120235 0.456371 4.78215 0.472312

CAGE analysis