Hb_012702_010

Information

Type -
Description -
Location Contig12702: 430-3415
Sequence    

Annotation

kegg
ID vvi:100247603
description TMV resistance protein N-like
nr
ID XP_010658856.1
description PREDICTED: TMV resistance protein N-like isoform X4 [Vitis vinifera]
swissprot
ID Q9RBS2
description Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2
trembl
ID F6GYX0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0147g00120 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012702_010 0.0 - - PREDICTED: TMV resistance protein N-like isoform X4 [Vitis vinifera]
2 Hb_019961_010 0.098638637 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
3 Hb_002272_140 0.1038596823 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
4 Hb_138628_010 0.1056412374 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
5 Hb_000172_300 0.11203182 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
6 Hb_004531_010 0.1260672812 - - PREDICTED: ankyrin repeat-containing protein At2g01680-like [Jatropha curcas]
7 Hb_011054_030 0.1300988848 - - PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
8 Hb_021596_070 0.1306425196 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
9 Hb_008667_020 0.1323386785 - - PREDICTED: uncharacterized protein LOC101299609 [Fragaria vesca subsp. vesca]
10 Hb_000181_080 0.1327884514 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
11 Hb_010080_020 0.1411204835 - - PREDICTED: uncharacterized protein LOC105635249 [Jatropha curcas]
12 Hb_000003_420 0.1426072945 - - o-methyltransferase, putative [Ricinus communis]
13 Hb_006911_060 0.1442484922 - - hypothetical protein CISIN_1g000594mg [Citrus sinensis]
14 Hb_009247_020 0.144806914 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
15 Hb_002042_190 0.1457708815 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
16 Hb_000347_370 0.1469376378 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
17 Hb_111985_060 0.1492950267 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
18 Hb_002284_020 0.1496294238 - - PREDICTED: probable inorganic phosphate transporter 1-9 [Jatropha curcas]
19 Hb_004267_070 0.1503548375 - - latex allene oxide synthase [Hevea brasiliensis]
20 Hb_007433_020 0.1506018281 - - hypothetical protein VITISV_005320 [Vitis vinifera]

Gene co-expression network

sample Hb_012702_010 Hb_012702_010 Hb_019961_010 Hb_019961_010 Hb_012702_010--Hb_019961_010 Hb_002272_140 Hb_002272_140 Hb_012702_010--Hb_002272_140 Hb_138628_010 Hb_138628_010 Hb_012702_010--Hb_138628_010 Hb_000172_300 Hb_000172_300 Hb_012702_010--Hb_000172_300 Hb_004531_010 Hb_004531_010 Hb_012702_010--Hb_004531_010 Hb_011054_030 Hb_011054_030 Hb_012702_010--Hb_011054_030 Hb_019961_010--Hb_138628_010 Hb_000133_060 Hb_000133_060 Hb_019961_010--Hb_000133_060 Hb_019961_010--Hb_002272_140 Hb_007433_020 Hb_007433_020 Hb_019961_010--Hb_007433_020 Hb_008667_020 Hb_008667_020 Hb_019961_010--Hb_008667_020 Hb_000103_400 Hb_000103_400 Hb_002272_140--Hb_000103_400 Hb_002272_140--Hb_138628_010 Hb_002284_020 Hb_002284_020 Hb_002272_140--Hb_002284_020 Hb_000473_080 Hb_000473_080 Hb_002272_140--Hb_000473_080 Hb_181824_010 Hb_181824_010 Hb_138628_010--Hb_181824_010 Hb_000003_420 Hb_000003_420 Hb_138628_010--Hb_000003_420 Hb_005568_060 Hb_005568_060 Hb_138628_010--Hb_005568_060 Hb_000039_100 Hb_000039_100 Hb_000172_300--Hb_000039_100 Hb_116349_050 Hb_116349_050 Hb_000172_300--Hb_116349_050 Hb_048653_040 Hb_048653_040 Hb_000172_300--Hb_048653_040 Hb_000172_300--Hb_011054_030 Hb_174829_040 Hb_174829_040 Hb_000172_300--Hb_174829_040 Hb_000347_370 Hb_000347_370 Hb_004531_010--Hb_000347_370 Hb_004267_070 Hb_004267_070 Hb_004531_010--Hb_004267_070 Hb_007305_040 Hb_007305_040 Hb_004531_010--Hb_007305_040 Hb_007383_050 Hb_007383_050 Hb_004531_010--Hb_007383_050 Hb_001411_150 Hb_001411_150 Hb_004531_010--Hb_001411_150 Hb_000210_150 Hb_000210_150 Hb_004531_010--Hb_000210_150 Hb_011054_030--Hb_000039_100 Hb_005054_300 Hb_005054_300 Hb_011054_030--Hb_005054_300 Hb_021596_070 Hb_021596_070 Hb_011054_030--Hb_021596_070 Hb_111985_060 Hb_111985_060 Hb_011054_030--Hb_111985_060 Hb_011054_030--Hb_008667_020 Hb_029866_140 Hb_029866_140 Hb_011054_030--Hb_029866_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.286515 33.4872 3.64768 5.51398 0.444311 0.55178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.172664 0.158485 0.298543 4.91169 0.617517

CAGE analysis