Hb_004267_070

Information

Type -
Description -
Location Contig4267: 115958-117532
Sequence    

Annotation

kegg
ID rcu:RCOM_1593180
description cytochrome P450, putative (EC:4.2.1.92)
nr
ID ABC49700.1
description latex allene oxide synthase [Hevea brasiliensis]
swissprot
ID P48417
description Allene oxide synthase, chloroplastic OS=Linum usitatissimum GN=CYP74A PE=1 SV=1
trembl
ID Q2PJB7
description Latex allene oxide synthase OS=Hevea brasiliensis GN=AOS PE=2 SV=1
Gene Ontology
ID GO:0004497
description allene oxide synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004267_070 0.0 - - latex allene oxide synthase [Hevea brasiliensis]
2 Hb_001168_100 0.0778158023 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Citrus sinensis]
3 Hb_000347_370 0.0788572023 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
4 Hb_007383_050 0.0872302751 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF061 [Jatropha curcas]
5 Hb_001411_150 0.0953307712 - - Dormancy/auxin associated family protein, putative [Theobroma cacao]
6 Hb_000210_150 0.0974804705 - - PREDICTED: protein YLS9-like [Jatropha curcas]
7 Hb_089140_020 0.100315396 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
8 Hb_004531_010 0.1068357186 - - PREDICTED: ankyrin repeat-containing protein At2g01680-like [Jatropha curcas]
9 Hb_025477_020 0.1099056641 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]
10 Hb_000172_300 0.1235543938 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
11 Hb_001289_030 0.1296183938 - - syntaxin, plant, putative [Ricinus communis]
12 Hb_011928_030 0.1321898325 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
13 Hb_009189_010 0.1323671766 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
14 Hb_035391_010 0.1347483669 - - TMV resistance protein N, putative [Ricinus communis]
15 Hb_019961_010 0.134980422 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]
16 Hb_000133_060 0.1353790978 - - PREDICTED: protein YLS9-like [Jatropha curcas]
17 Hb_055706_010 0.1355097333 - - hypothetical protein JCGZ_22222 [Jatropha curcas]
18 Hb_007305_040 0.1360260077 - - Nodulin-26, putative [Ricinus communis]
19 Hb_027214_060 0.1361505148 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
20 Hb_005605_030 0.1376358776 - - hypothetical protein JCGZ_01308 [Jatropha curcas]

Gene co-expression network

sample Hb_004267_070 Hb_004267_070 Hb_001168_100 Hb_001168_100 Hb_004267_070--Hb_001168_100 Hb_000347_370 Hb_000347_370 Hb_004267_070--Hb_000347_370 Hb_007383_050 Hb_007383_050 Hb_004267_070--Hb_007383_050 Hb_001411_150 Hb_001411_150 Hb_004267_070--Hb_001411_150 Hb_000210_150 Hb_000210_150 Hb_004267_070--Hb_000210_150 Hb_089140_020 Hb_089140_020 Hb_004267_070--Hb_089140_020 Hb_001168_100--Hb_000347_370 Hb_001168_100--Hb_007383_050 Hb_001168_100--Hb_089140_020 Hb_001168_100--Hb_001411_150 Hb_002475_110 Hb_002475_110 Hb_001168_100--Hb_002475_110 Hb_000347_370--Hb_007383_050 Hb_011928_030 Hb_011928_030 Hb_000347_370--Hb_011928_030 Hb_007305_040 Hb_007305_040 Hb_000347_370--Hb_007305_040 Hb_133646_010 Hb_133646_010 Hb_000347_370--Hb_133646_010 Hb_007383_050--Hb_001411_150 Hb_009189_010 Hb_009189_010 Hb_007383_050--Hb_009189_010 Hb_007383_050--Hb_089140_020 Hb_001411_150--Hb_009189_010 Hb_001289_030 Hb_001289_030 Hb_001411_150--Hb_001289_030 Hb_001411_150--Hb_089140_020 Hb_025477_020 Hb_025477_020 Hb_000210_150--Hb_025477_020 Hb_035391_010 Hb_035391_010 Hb_000210_150--Hb_035391_010 Hb_158123_010 Hb_158123_010 Hb_000210_150--Hb_158123_010 Hb_027214_060 Hb_027214_060 Hb_000210_150--Hb_027214_060 Hb_000316_150 Hb_000316_150 Hb_000210_150--Hb_000316_150 Hb_189242_010 Hb_189242_010 Hb_089140_020--Hb_189242_010 Hb_055706_010 Hb_055706_010 Hb_089140_020--Hb_055706_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.220078 919.742 88.4173 165.687 0.126529 0.228146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.531526 8.89787 0.0874552 68.9115 7.69445

CAGE analysis