Hb_000210_150

Information

Type -
Description -
Location Contig210: 213937-214608
Sequence    

Annotation

kegg
ID tcc:TCM_022885
description Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family, putative
nr
ID XP_012074338.1
description PREDICTED: protein YLS9-like [Jatropha curcas]
swissprot
ID Q9SJ52
description Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1
trembl
ID A0A067KM96
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08772 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21746: 214021-214335
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000210_150 0.0 - - PREDICTED: protein YLS9-like [Jatropha curcas]
2 Hb_025477_020 0.0935773585 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF027 [Jatropha curcas]
3 Hb_004267_070 0.0974804705 - - latex allene oxide synthase [Hevea brasiliensis]
4 Hb_035391_010 0.1019201306 - - TMV resistance protein N, putative [Ricinus communis]
5 Hb_158123_010 0.1044167363 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_027214_060 0.1093771343 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
7 Hb_000316_150 0.1121285517 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
8 Hb_002311_490 0.1132758334 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
9 Hb_004531_010 0.1140162514 - - PREDICTED: ankyrin repeat-containing protein At2g01680-like [Jatropha curcas]
10 Hb_000172_300 0.114032492 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
11 Hb_174829_040 0.1143041541 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
12 Hb_001411_150 0.114461892 - - Dormancy/auxin associated family protein, putative [Theobroma cacao]
13 Hb_073870_020 0.1149389761 - - PREDICTED: probable receptor-like protein kinase At1g67000, partial [Jatropha curcas]
14 Hb_007383_050 0.1227693163 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF061 [Jatropha curcas]
15 Hb_009189_010 0.123463218 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
16 Hb_055706_010 0.1235595375 - - hypothetical protein JCGZ_22222 [Jatropha curcas]
17 Hb_001168_100 0.123669746 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2-like [Citrus sinensis]
18 Hb_000181_080 0.1246054393 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
19 Hb_002042_190 0.1257180972 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
20 Hb_005882_020 0.1260729241 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000210_150 Hb_000210_150 Hb_025477_020 Hb_025477_020 Hb_000210_150--Hb_025477_020 Hb_004267_070 Hb_004267_070 Hb_000210_150--Hb_004267_070 Hb_035391_010 Hb_035391_010 Hb_000210_150--Hb_035391_010 Hb_158123_010 Hb_158123_010 Hb_000210_150--Hb_158123_010 Hb_027214_060 Hb_027214_060 Hb_000210_150--Hb_027214_060 Hb_000316_150 Hb_000316_150 Hb_000210_150--Hb_000316_150 Hb_002922_010 Hb_002922_010 Hb_025477_020--Hb_002922_010 Hb_003582_020 Hb_003582_020 Hb_025477_020--Hb_003582_020 Hb_009707_010 Hb_009707_010 Hb_025477_020--Hb_009707_010 Hb_001289_030 Hb_001289_030 Hb_025477_020--Hb_001289_030 Hb_001477_080 Hb_001477_080 Hb_025477_020--Hb_001477_080 Hb_001168_100 Hb_001168_100 Hb_004267_070--Hb_001168_100 Hb_000347_370 Hb_000347_370 Hb_004267_070--Hb_000347_370 Hb_007383_050 Hb_007383_050 Hb_004267_070--Hb_007383_050 Hb_001411_150 Hb_001411_150 Hb_004267_070--Hb_001411_150 Hb_089140_020 Hb_089140_020 Hb_004267_070--Hb_089140_020 Hb_035391_010--Hb_003582_020 Hb_035391_010--Hb_025477_020 Hb_055706_010 Hb_055706_010 Hb_035391_010--Hb_055706_010 Hb_136027_010 Hb_136027_010 Hb_035391_010--Hb_136027_010 Hb_002311_490 Hb_002311_490 Hb_035391_010--Hb_002311_490 Hb_006483_050 Hb_006483_050 Hb_158123_010--Hb_006483_050 Hb_158123_010--Hb_002311_490 Hb_011287_020 Hb_011287_020 Hb_158123_010--Hb_011287_020 Hb_158123_010--Hb_035391_010 Hb_000465_330 Hb_000465_330 Hb_158123_010--Hb_000465_330 Hb_000227_410 Hb_000227_410 Hb_027214_060--Hb_000227_410 Hb_002475_110 Hb_002475_110 Hb_027214_060--Hb_002475_110 Hb_073870_020 Hb_073870_020 Hb_027214_060--Hb_073870_020 Hb_147137_020 Hb_147137_020 Hb_027214_060--Hb_147137_020 Hb_000904_090 Hb_000904_090 Hb_027214_060--Hb_000904_090 Hb_000347_360 Hb_000347_360 Hb_027214_060--Hb_000347_360 Hb_004324_290 Hb_004324_290 Hb_000316_150--Hb_004324_290 Hb_000316_150--Hb_006483_050 Hb_000316_150--Hb_158123_010 Hb_005882_020 Hb_005882_020 Hb_000316_150--Hb_005882_020 Hb_000574_120 Hb_000574_120 Hb_000316_150--Hb_000574_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.73713 336.524 34.613 52.6778 0.24594 0.910598
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.37079 4.24287 3.58784 13.3421 4.63764

CAGE analysis