Hb_000473_080

Information

Type -
Description -
Location Contig473: 83222-88513
Sequence    

Annotation

kegg
ID cic:CICLE_v10000576mg
description hypothetical protein
nr
ID XP_011031115.1
description PREDICTED: lipase-like PAD4 [Populus euphratica]
swissprot
ID Q9S745
description Lipase-like PAD4 OS=Arabidopsis thaliana GN=PAD4 PE=1 SV=1
trembl
ID V4T711
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10000576mg PE=4 SV=1
Gene Ontology
ID GO:0016787
description lipase-like pad4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44420: 83287-88241
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000473_080 0.0 - - PREDICTED: lipase-like PAD4 [Populus euphratica]
2 Hb_000359_080 0.1023657915 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
3 Hb_000003_420 0.1041222522 - - o-methyltransferase, putative [Ricinus communis]
4 Hb_000752_020 0.1047987817 - - PREDICTED: uncharacterized protein LOC105641803 isoform X1 [Jatropha curcas]
5 Hb_073119_010 0.1197111942 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
6 Hb_000103_400 0.119713985 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
7 Hb_002272_140 0.1256245824 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
8 Hb_000776_050 0.12568944 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
9 Hb_029866_050 0.1264676409 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
10 Hb_002284_020 0.1272529998 - - PREDICTED: probable inorganic phosphate transporter 1-9 [Jatropha curcas]
11 Hb_000363_110 0.1287543277 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
12 Hb_000771_070 0.1298100252 - - PREDICTED: plastidial pyruvate kinase 4, chloroplastic [Jatropha curcas]
13 Hb_001898_010 0.1337814189 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
14 Hb_009083_010 0.1409072127 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
15 Hb_000397_090 0.1416981258 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
16 Hb_000172_080 0.1418744084 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-4-like [Jatropha curcas]
17 Hb_009476_110 0.1434546673 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
18 Hb_000027_130 0.1476486567 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]
19 Hb_000107_440 0.1492782076 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
20 Hb_003914_050 0.1516667436 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]

Gene co-expression network

sample Hb_000473_080 Hb_000473_080 Hb_000359_080 Hb_000359_080 Hb_000473_080--Hb_000359_080 Hb_000003_420 Hb_000003_420 Hb_000473_080--Hb_000003_420 Hb_000752_020 Hb_000752_020 Hb_000473_080--Hb_000752_020 Hb_073119_010 Hb_073119_010 Hb_000473_080--Hb_073119_010 Hb_000103_400 Hb_000103_400 Hb_000473_080--Hb_000103_400 Hb_002272_140 Hb_002272_140 Hb_000473_080--Hb_002272_140 Hb_000172_080 Hb_000172_080 Hb_000359_080--Hb_000172_080 Hb_029866_050 Hb_029866_050 Hb_000359_080--Hb_029866_050 Hb_000359_080--Hb_000003_420 Hb_000359_080--Hb_000103_400 Hb_000363_110 Hb_000363_110 Hb_000359_080--Hb_000363_110 Hb_000397_090 Hb_000397_090 Hb_000003_420--Hb_000397_090 Hb_000003_420--Hb_029866_050 Hb_000003_420--Hb_073119_010 Hb_006698_020 Hb_006698_020 Hb_000003_420--Hb_006698_020 Hb_000003_420--Hb_000363_110 Hb_000027_130 Hb_000027_130 Hb_000752_020--Hb_000027_130 Hb_000771_070 Hb_000771_070 Hb_000752_020--Hb_000771_070 Hb_003529_230 Hb_003529_230 Hb_000752_020--Hb_003529_230 Hb_000252_080 Hb_000252_080 Hb_000752_020--Hb_000252_080 Hb_005814_010 Hb_005814_010 Hb_000752_020--Hb_005814_010 Hb_003556_070 Hb_003556_070 Hb_073119_010--Hb_003556_070 Hb_000098_250 Hb_000098_250 Hb_073119_010--Hb_000098_250 Hb_000819_010 Hb_000819_010 Hb_073119_010--Hb_000819_010 Hb_000094_010 Hb_000094_010 Hb_073119_010--Hb_000094_010 Hb_017604_020 Hb_017604_020 Hb_073119_010--Hb_017604_020 Hb_000103_400--Hb_002272_140 Hb_000181_080 Hb_000181_080 Hb_000103_400--Hb_000181_080 Hb_006414_020 Hb_006414_020 Hb_000103_400--Hb_006414_020 Hb_000803_060 Hb_000803_060 Hb_000103_400--Hb_000803_060 Hb_012702_010 Hb_012702_010 Hb_002272_140--Hb_012702_010 Hb_138628_010 Hb_138628_010 Hb_002272_140--Hb_138628_010 Hb_019961_010 Hb_019961_010 Hb_002272_140--Hb_019961_010 Hb_002284_020 Hb_002284_020 Hb_002272_140--Hb_002284_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.92706 107.106 31.8827 21.808 0.424953 1.58242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.33012 4.4519 2.6386 19.6301 8.98168

CAGE analysis