Hb_000252_080

Information

Type -
Description -
Location Contig252: 58339-61702
Sequence    

Annotation

kegg
ID rcu:RCOM_0024340
description catalytic, putative
nr
ID XP_012085456.1
description PREDICTED: uncharacterized protein LOC105644644 [Jatropha curcas]
swissprot
ID P04635
description Lipase OS=Staphylococcus hyicus GN=lip PE=1 SV=1
trembl
ID A0A067JRQ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17794 PE=4 SV=1
Gene Ontology
ID GO:0016787
description alpha beta-hydrolases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26355: 58404-58604 , PASA_asmbl_26356: 58668-60240 , PASA_asmbl_26357: 60894-61690
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000252_080 0.0 - - PREDICTED: uncharacterized protein LOC105644644 [Jatropha curcas]
2 Hb_000752_020 0.1316510045 - - PREDICTED: uncharacterized protein LOC105641803 isoform X1 [Jatropha curcas]
3 Hb_009083_010 0.1361383685 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
4 Hb_004459_110 0.1401154035 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
5 Hb_006970_150 0.1422225273 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
6 Hb_006120_170 0.1467138758 transcription factor TF Family: MYB PREDICTED: transcription factor MYB108-like [Populus euphratica]
7 Hb_004235_060 0.1489852572 - - phosphate transporter [Manihot esculenta]
8 Hb_000223_050 0.1517714639 - - PREDICTED: endochitinase A-like [Jatropha curcas]
9 Hb_006634_080 0.154588945 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
10 Hb_000473_080 0.1546384109 - - PREDICTED: lipase-like PAD4 [Populus euphratica]
11 Hb_004007_120 0.1585020694 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type isoform X1 [Populus euphratica]
12 Hb_008948_080 0.1590340882 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
13 Hb_000996_200 0.1639427943 - - PREDICTED: (+)-neomenthol dehydrogenase-like [Populus euphratica]
14 Hb_001374_040 0.1689240605 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Gossypium raimondii]
15 Hb_005357_270 0.1711345462 - - Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative [Ricinus communis]
16 Hb_000914_130 0.1756481609 - - copper-transporting atpase p-type, putative [Ricinus communis]
17 Hb_004230_060 0.1781152576 - - PREDICTED: ferritin, chloroplastic-like [Populus euphratica]
18 Hb_073119_010 0.1792376567 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
19 Hb_002284_020 0.180394807 - - PREDICTED: probable inorganic phosphate transporter 1-9 [Jatropha curcas]
20 Hb_000027_130 0.1808865828 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 [Jatropha curcas]

Gene co-expression network

sample Hb_000252_080 Hb_000252_080 Hb_000752_020 Hb_000752_020 Hb_000252_080--Hb_000752_020 Hb_009083_010 Hb_009083_010 Hb_000252_080--Hb_009083_010 Hb_004459_110 Hb_004459_110 Hb_000252_080--Hb_004459_110 Hb_006970_150 Hb_006970_150 Hb_000252_080--Hb_006970_150 Hb_006120_170 Hb_006120_170 Hb_000252_080--Hb_006120_170 Hb_004235_060 Hb_004235_060 Hb_000252_080--Hb_004235_060 Hb_000027_130 Hb_000027_130 Hb_000752_020--Hb_000027_130 Hb_000771_070 Hb_000771_070 Hb_000752_020--Hb_000771_070 Hb_000473_080 Hb_000473_080 Hb_000752_020--Hb_000473_080 Hb_003529_230 Hb_003529_230 Hb_000752_020--Hb_003529_230 Hb_005814_010 Hb_005814_010 Hb_000752_020--Hb_005814_010 Hb_022206_030 Hb_022206_030 Hb_009083_010--Hb_022206_030 Hb_174380_010 Hb_174380_010 Hb_009083_010--Hb_174380_010 Hb_006634_080 Hb_006634_080 Hb_009083_010--Hb_006634_080 Hb_005357_270 Hb_005357_270 Hb_009083_010--Hb_005357_270 Hb_000133_060 Hb_000133_060 Hb_009083_010--Hb_000133_060 Hb_000996_200 Hb_000996_200 Hb_004459_110--Hb_000996_200 Hb_002085_070 Hb_002085_070 Hb_004459_110--Hb_002085_070 Hb_000002_100 Hb_000002_100 Hb_004459_110--Hb_000002_100 Hb_004459_110--Hb_006634_080 Hb_157980_010 Hb_157980_010 Hb_004459_110--Hb_157980_010 Hb_004459_110--Hb_006970_150 Hb_033045_010 Hb_033045_010 Hb_006970_150--Hb_033045_010 Hb_000075_110 Hb_000075_110 Hb_006970_150--Hb_000075_110 Hb_002518_270 Hb_002518_270 Hb_006970_150--Hb_002518_270 Hb_000120_070 Hb_000120_070 Hb_006970_150--Hb_000120_070 Hb_000265_020 Hb_000265_020 Hb_006970_150--Hb_000265_020 Hb_008948_080 Hb_008948_080 Hb_006970_150--Hb_008948_080 Hb_006120_170--Hb_004235_060 Hb_009775_040 Hb_009775_040 Hb_006120_170--Hb_009775_040 Hb_000914_130 Hb_000914_130 Hb_006120_170--Hb_000914_130 Hb_006120_170--Hb_000752_020 Hb_001374_040 Hb_001374_040 Hb_006120_170--Hb_001374_040 Hb_000347_020 Hb_000347_020 Hb_004235_060--Hb_000347_020 Hb_004235_060--Hb_009083_010 Hb_006615_160 Hb_006615_160 Hb_004235_060--Hb_006615_160 Hb_031108_010 Hb_031108_010 Hb_004235_060--Hb_031108_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0883067 23.9722 9.3969 3.09977 0.0508623 0.0790988
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.438584 1.85961 0.362844 9.03673 1.21291

CAGE analysis