Hb_000347_020

Information

Type -
Description -
Location Contig347: 49347-50346
Sequence    

Annotation

kegg
ID tcc:TCM_029211
description Dormancy/auxin associated family protein, putative
nr
ID XP_007024723.1
description Dormancy/auxin associated family protein, putative [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GBU9
description Dormancy/auxin associated family protein, putative OS=Theobroma cacao GN=TCM_029211 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36166: 12327-50471 , PASA_asmbl_36168: 12327-50377
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_020 0.0 - - Dormancy/auxin associated family protein, putative [Theobroma cacao]
2 Hb_000051_030 0.1426293502 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
3 Hb_001318_110 0.1517682881 - - PREDICTED: uncharacterized protein LOC105642677 [Jatropha curcas]
4 Hb_006615_160 0.153927904 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]
5 Hb_005649_010 0.1617551315 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
6 Hb_004235_060 0.162658067 - - phosphate transporter [Manihot esculenta]
7 Hb_000110_030 0.1716375724 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
8 Hb_001141_210 0.17737677 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105632009 [Jatropha curcas]
9 Hb_000552_090 0.177427645 - - hypothetical protein JCGZ_18511 [Jatropha curcas]
10 Hb_000031_160 0.1777032051 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
11 Hb_002641_050 0.177856252 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 48 [Jatropha curcas]
12 Hb_005814_010 0.1898243699 - - ATP binding protein, putative [Ricinus communis]
13 Hb_017857_010 0.1898669787 - - -
14 Hb_004785_160 0.193559877 - - PREDICTED: U-box domain-containing protein 28-like [Jatropha curcas]
15 Hb_000009_300 0.194441811 - - hypothetical protein CICLE_v10024731mg [Citrus clementina]
16 Hb_000598_020 0.1949342371 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
17 Hb_002030_180 0.1966060391 - - ring finger protein, putative [Ricinus communis]
18 Hb_013938_010 0.2014238904 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
19 Hb_005628_050 0.2015064602 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
20 Hb_000108_040 0.2030538466 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Gossypium raimondii]

Gene co-expression network

sample Hb_000347_020 Hb_000347_020 Hb_000051_030 Hb_000051_030 Hb_000347_020--Hb_000051_030 Hb_001318_110 Hb_001318_110 Hb_000347_020--Hb_001318_110 Hb_006615_160 Hb_006615_160 Hb_000347_020--Hb_006615_160 Hb_005649_010 Hb_005649_010 Hb_000347_020--Hb_005649_010 Hb_004235_060 Hb_004235_060 Hb_000347_020--Hb_004235_060 Hb_000110_030 Hb_000110_030 Hb_000347_020--Hb_000110_030 Hb_004286_030 Hb_004286_030 Hb_000051_030--Hb_004286_030 Hb_029622_020 Hb_029622_020 Hb_000051_030--Hb_029622_020 Hb_068492_010 Hb_068492_010 Hb_000051_030--Hb_068492_010 Hb_002662_090 Hb_002662_090 Hb_000051_030--Hb_002662_090 Hb_000051_030--Hb_001318_110 Hb_001318_110--Hb_005649_010 Hb_002641_050 Hb_002641_050 Hb_001318_110--Hb_002641_050 Hb_013938_010 Hb_013938_010 Hb_001318_110--Hb_013938_010 Hb_001832_240 Hb_001832_240 Hb_001318_110--Hb_001832_240 Hb_005628_050 Hb_005628_050 Hb_001318_110--Hb_005628_050 Hb_000031_160 Hb_000031_160 Hb_001318_110--Hb_000031_160 Hb_017857_010 Hb_017857_010 Hb_006615_160--Hb_017857_010 Hb_001329_080 Hb_001329_080 Hb_006615_160--Hb_001329_080 Hb_000853_100 Hb_000853_100 Hb_006615_160--Hb_000853_100 Hb_000009_300 Hb_000009_300 Hb_006615_160--Hb_000009_300 Hb_002030_180 Hb_002030_180 Hb_006615_160--Hb_002030_180 Hb_000172_050 Hb_000172_050 Hb_006615_160--Hb_000172_050 Hb_002343_020 Hb_002343_020 Hb_005649_010--Hb_002343_020 Hb_003964_010 Hb_003964_010 Hb_005649_010--Hb_003964_010 Hb_064985_010 Hb_064985_010 Hb_005649_010--Hb_064985_010 Hb_001377_130 Hb_001377_130 Hb_005649_010--Hb_001377_130 Hb_005649_010--Hb_013938_010 Hb_006120_170 Hb_006120_170 Hb_004235_060--Hb_006120_170 Hb_000252_080 Hb_000252_080 Hb_004235_060--Hb_000252_080 Hb_009083_010 Hb_009083_010 Hb_004235_060--Hb_009083_010 Hb_004235_060--Hb_006615_160 Hb_031108_010 Hb_031108_010 Hb_004235_060--Hb_031108_010 Hb_004785_160 Hb_004785_160 Hb_000110_030--Hb_004785_160 Hb_010573_040 Hb_010573_040 Hb_000110_030--Hb_010573_040 Hb_000598_020 Hb_000598_020 Hb_000110_030--Hb_000598_020 Hb_000110_030--Hb_000031_160 Hb_001141_210 Hb_001141_210 Hb_000110_030--Hb_001141_210 Hb_177215_020 Hb_177215_020 Hb_000110_030--Hb_177215_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.9456 234.46 173.95 130.62 0.533052 0.574995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.4552 8.40039 1.75732 130.126 5.83483

CAGE analysis