Hb_000051_030

Information

Type -
Description -
Location Contig51: 23866-28354
Sequence    

Annotation

kegg
ID tcc:TCM_045399
description Seven in absentia of 2 isoform 1
nr
ID XP_012093310.1
description PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
swissprot
ID Q9M2P4
description E3 ubiquitin-protein ligase SINAT2 OS=Arabidopsis thaliana GN=SINAT2 PE=1 SV=1
trembl
ID A0A067L7D9
description E3 ubiquitin-protein ligase OS=Jatropha curcas GN=JCGZ_19174 PE=3 SV=1
Gene Ontology
ID GO:0005634
description e3 ubiquitin-protein ligase sinat2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000051_030 0.0 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
2 Hb_000347_020 0.1426293502 - - Dormancy/auxin associated family protein, putative [Theobroma cacao]
3 Hb_004286_030 0.1445340063 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
4 Hb_029622_020 0.1526999226 - - conserved hypothetical protein [Ricinus communis]
5 Hb_068492_010 0.1661207962 - - -
6 Hb_002662_090 0.167751032 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
7 Hb_001318_110 0.1699038212 - - PREDICTED: uncharacterized protein LOC105642677 [Jatropha curcas]
8 Hb_005649_010 0.1707004612 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
9 Hb_002641_050 0.171030022 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 48 [Jatropha curcas]
10 Hb_029584_090 0.1738118975 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
11 Hb_001856_170 0.1759472065 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
12 Hb_004007_120 0.1766780073 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type isoform X1 [Populus euphratica]
13 Hb_019863_030 0.1803624623 - - hypothetical protein JCGZ_00393 [Jatropha curcas]
14 Hb_000840_070 0.1814692309 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
15 Hb_000914_130 0.1818046183 - - copper-transporting atpase p-type, putative [Ricinus communis]
16 Hb_000836_610 0.1822933344 - - stem-specific protein TSJT1-like [Jatropha curcas]
17 Hb_004586_240 0.1848570438 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
18 Hb_001100_030 0.1893991854 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
19 Hb_001842_060 0.1907135722 desease resistance Gene Name: ABC_trans_N hypothetical protein JCGZ_10908 [Jatropha curcas]
20 Hb_006615_160 0.1913700592 - - PREDICTED: UDP-glycosyltransferase 89B1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000051_030 Hb_000051_030 Hb_000347_020 Hb_000347_020 Hb_000051_030--Hb_000347_020 Hb_004286_030 Hb_004286_030 Hb_000051_030--Hb_004286_030 Hb_029622_020 Hb_029622_020 Hb_000051_030--Hb_029622_020 Hb_068492_010 Hb_068492_010 Hb_000051_030--Hb_068492_010 Hb_002662_090 Hb_002662_090 Hb_000051_030--Hb_002662_090 Hb_001318_110 Hb_001318_110 Hb_000051_030--Hb_001318_110 Hb_000347_020--Hb_001318_110 Hb_006615_160 Hb_006615_160 Hb_000347_020--Hb_006615_160 Hb_005649_010 Hb_005649_010 Hb_000347_020--Hb_005649_010 Hb_004235_060 Hb_004235_060 Hb_000347_020--Hb_004235_060 Hb_000110_030 Hb_000110_030 Hb_000347_020--Hb_000110_030 Hb_004286_030--Hb_002662_090 Hb_010578_050 Hb_010578_050 Hb_004286_030--Hb_010578_050 Hb_001842_060 Hb_001842_060 Hb_004286_030--Hb_001842_060 Hb_005186_090 Hb_005186_090 Hb_004286_030--Hb_005186_090 Hb_000625_060 Hb_000625_060 Hb_004286_030--Hb_000625_060 Hb_004032_090 Hb_004032_090 Hb_029622_020--Hb_004032_090 Hb_011716_050 Hb_011716_050 Hb_029622_020--Hb_011716_050 Hb_029622_020--Hb_005649_010 Hb_000953_040 Hb_000953_040 Hb_029622_020--Hb_000953_040 Hb_114684_010 Hb_114684_010 Hb_029622_020--Hb_114684_010 Hb_068492_010--Hb_029622_020 Hb_002641_050 Hb_002641_050 Hb_068492_010--Hb_002641_050 Hb_008453_080 Hb_008453_080 Hb_068492_010--Hb_008453_080 Hb_000836_610 Hb_000836_610 Hb_068492_010--Hb_000836_610 Hb_019863_030 Hb_019863_030 Hb_068492_010--Hb_019863_030 Hb_001369_160 Hb_001369_160 Hb_002662_090--Hb_001369_160 Hb_002662_090--Hb_001842_060 Hb_002928_180 Hb_002928_180 Hb_002662_090--Hb_002928_180 Hb_010174_190 Hb_010174_190 Hb_002662_090--Hb_010174_190 Hb_003894_100 Hb_003894_100 Hb_002662_090--Hb_003894_100 Hb_001318_110--Hb_005649_010 Hb_001318_110--Hb_002641_050 Hb_013938_010 Hb_013938_010 Hb_001318_110--Hb_013938_010 Hb_001832_240 Hb_001832_240 Hb_001318_110--Hb_001832_240 Hb_005628_050 Hb_005628_050 Hb_001318_110--Hb_005628_050 Hb_000031_160 Hb_000031_160 Hb_001318_110--Hb_000031_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.110358 1.3092 0.920161 0.695126 0.0229639 0.064466
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.195362 0.109789 0.0414008 1.27802 0.0461151

CAGE analysis