Hb_011716_050

Information

Type -
Description -
Location Contig11716: 25024-26458
Sequence    

Annotation

kegg
ID pop:POPTR_0013s11380g
description serine acetyltransferase family protein
nr
ID AIS36114.1
description serine acetyltransferase [Hevea brasiliensis]
swissprot
ID Q42538
description Serine acetyltransferase 5 OS=Arabidopsis thaliana GN=SAT5 PE=1 SV=1
trembl
ID A0A0B4PL87
description Serine acetyltransferase OS=Hevea brasiliensis GN=SAT2 PE=2 SV=1
Gene Ontology
ID GO:0005737
description serine acetyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05311: 25044-26516
cDNA
(Sanger)
(ID:Location)		 022_H21.ab1: 25756-26481 , 034_P07.ab1: 25512-26481 , 046_P13.ab1: 25572-26507

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011716_050 0.0 - - serine acetyltransferase [Hevea brasiliensis]
2 Hb_000107_440 0.1307873248 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
3 Hb_029622_020 0.1389018386 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006846_020 0.1394580366 - - PREDICTED: uncharacterized protein LOC105648685 [Jatropha curcas]
5 Hb_000038_040 0.1510857246 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
6 Hb_006935_010 0.1591743269 - - PREDICTED: inositol transporter 1 isoform X1 [Gossypium raimondii]
7 Hb_001959_120 0.1625954056 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
8 Hb_000084_220 0.1667011827 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
9 Hb_001195_730 0.1670646447 - - PREDICTED: protein LYK5-like [Jatropha curcas]
10 Hb_114684_010 0.1706570478 - - PREDICTED: seed maturation protein PM36 [Jatropha curcas]
11 Hb_000116_210 0.1761356385 - - PREDICTED: uncharacterized protein LOC105628567 [Jatropha curcas]
12 Hb_002471_140 0.1761589355 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
13 Hb_008667_060 0.1769417357 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
14 Hb_004007_120 0.177231507 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type isoform X1 [Populus euphratica]
15 Hb_001049_160 0.1786987947 - - aldose 1-epimerase, putative [Ricinus communis]
16 Hb_124315_030 0.1793176766 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
17 Hb_000977_090 0.1816900926 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
18 Hb_002477_120 0.1824369073 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
19 Hb_007676_020 0.1849102397 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Jatropha curcas]
20 Hb_006501_170 0.1862596401 - - hypothetical protein JCGZ_07371 [Jatropha curcas]

Gene co-expression network

sample Hb_011716_050 Hb_011716_050 Hb_000107_440 Hb_000107_440 Hb_011716_050--Hb_000107_440 Hb_029622_020 Hb_029622_020 Hb_011716_050--Hb_029622_020 Hb_006846_020 Hb_006846_020 Hb_011716_050--Hb_006846_020 Hb_000038_040 Hb_000038_040 Hb_011716_050--Hb_000038_040 Hb_006935_010 Hb_006935_010 Hb_011716_050--Hb_006935_010 Hb_001959_120 Hb_001959_120 Hb_011716_050--Hb_001959_120 Hb_000107_440--Hb_000038_040 Hb_000803_060 Hb_000803_060 Hb_000107_440--Hb_000803_060 Hb_000107_440--Hb_006846_020 Hb_002477_120 Hb_002477_120 Hb_000107_440--Hb_002477_120 Hb_007007_080 Hb_007007_080 Hb_000107_440--Hb_007007_080 Hb_004032_090 Hb_004032_090 Hb_029622_020--Hb_004032_090 Hb_005649_010 Hb_005649_010 Hb_029622_020--Hb_005649_010 Hb_000953_040 Hb_000953_040 Hb_029622_020--Hb_000953_040 Hb_114684_010 Hb_114684_010 Hb_029622_020--Hb_114684_010 Hb_000051_030 Hb_000051_030 Hb_029622_020--Hb_000051_030 Hb_006846_020--Hb_000038_040 Hb_006846_020--Hb_002477_120 Hb_006846_020--Hb_007007_080 Hb_004208_140 Hb_004208_140 Hb_006846_020--Hb_004208_140 Hb_003207_100 Hb_003207_100 Hb_006846_020--Hb_003207_100 Hb_000038_040--Hb_006935_010 Hb_000038_040--Hb_007007_080 Hb_000776_050 Hb_000776_050 Hb_000038_040--Hb_000776_050 Hb_007382_100 Hb_007382_100 Hb_000038_040--Hb_007382_100 Hb_002639_100 Hb_002639_100 Hb_006935_010--Hb_002639_100 Hb_006935_010--Hb_006846_020 Hb_001049_160 Hb_001049_160 Hb_006935_010--Hb_001049_160 Hb_006935_010--Hb_007382_100 Hb_018790_080 Hb_018790_080 Hb_006935_010--Hb_018790_080 Hb_000120_160 Hb_000120_160 Hb_001959_120--Hb_000120_160 Hb_001486_200 Hb_001486_200 Hb_001959_120--Hb_001486_200 Hb_000672_150 Hb_000672_150 Hb_001959_120--Hb_000672_150 Hb_000084_220 Hb_000084_220 Hb_001959_120--Hb_000084_220 Hb_002876_250 Hb_002876_250 Hb_001959_120--Hb_002876_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.13433 128.795 41.8767 31.7021 2.29822 3.75396
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.6826 16.6231 13.9485 63.8843 16.1336

CAGE analysis