Hb_000120_160

Information

Type -
Description -
Location Contig120: 105261-110564
Sequence    

Annotation

kegg
ID vvi:100267204
description U-box domain-containing protein 44-like
nr
ID CBI15940.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9SFX2
description U-box domain-containing protein 43 OS=Arabidopsis thaliana GN=PUB43 PE=2 SV=1
trembl
ID D7SJW4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g06750 PE=4 SV=1
Gene Ontology
ID GO:0004842
description u-box domain-containing protein 44-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06065: 105292-105891 , PASA_asmbl_06067: 106298-107828 , PASA_asmbl_06068: 108349-109639 , PASA_asmbl_06069: 109661-110364 , PASA_asmbl_06070: 110027-110136
cDNA
(Sanger)
(ID:Location)		 016_D13r.ab1: 111390-112986

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_160 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000805_230 0.1020205287 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
3 Hb_002876_250 0.10513437 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
4 Hb_000116_210 0.1131943686 - - PREDICTED: uncharacterized protein LOC105628567 [Jatropha curcas]
5 Hb_005496_180 0.1162924905 - - PREDICTED: U-box domain-containing protein 4-like [Jatropha curcas]
6 Hb_001288_070 0.1181858144 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
7 Hb_002154_020 0.1195931748 - - protein with unknown function [Ricinus communis]
8 Hb_000059_130 0.1200699795 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
9 Hb_000805_190 0.1207056739 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
10 Hb_002915_070 0.1236648196 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
11 Hb_001488_040 0.1367818443 - - PREDICTED: nipped-B-like protein A [Jatropha curcas]
12 Hb_002477_120 0.1368047911 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
13 Hb_002249_050 0.1385036286 - - Auxin response factor, putative [Ricinus communis]
14 Hb_002387_040 0.1421468257 - - protein transporter, putative [Ricinus communis]
15 Hb_003747_210 0.1428721845 - - PREDICTED: uncharacterized protein LOC105630240 [Jatropha curcas]
16 Hb_000069_780 0.1439148713 - - atpob1, putative [Ricinus communis]
17 Hb_002400_160 0.1441102274 - - Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]
18 Hb_008511_100 0.1447790642 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]
19 Hb_004994_300 0.1449672882 - - synaptotagmin, putative [Ricinus communis]
20 Hb_002639_100 0.1451515947 - - dehydrin [Hevea brasiliensis]

Gene co-expression network

sample Hb_000120_160 Hb_000120_160 Hb_000805_230 Hb_000805_230 Hb_000120_160--Hb_000805_230 Hb_002876_250 Hb_002876_250 Hb_000120_160--Hb_002876_250 Hb_000116_210 Hb_000116_210 Hb_000120_160--Hb_000116_210 Hb_005496_180 Hb_005496_180 Hb_000120_160--Hb_005496_180 Hb_001288_070 Hb_001288_070 Hb_000120_160--Hb_001288_070 Hb_002154_020 Hb_002154_020 Hb_000120_160--Hb_002154_020 Hb_002915_070 Hb_002915_070 Hb_000805_230--Hb_002915_070 Hb_000179_230 Hb_000179_230 Hb_000805_230--Hb_000179_230 Hb_000805_230--Hb_000116_210 Hb_004032_310 Hb_004032_310 Hb_000805_230--Hb_004032_310 Hb_000448_060 Hb_000448_060 Hb_000805_230--Hb_000448_060 Hb_002876_250--Hb_000116_210 Hb_000207_290 Hb_000207_290 Hb_002876_250--Hb_000207_290 Hb_002876_250--Hb_000805_230 Hb_000836_600 Hb_000836_600 Hb_002876_250--Hb_000836_600 Hb_000805_190 Hb_000805_190 Hb_002876_250--Hb_000805_190 Hb_000116_210--Hb_001288_070 Hb_000116_210--Hb_002154_020 Hb_023344_060 Hb_023344_060 Hb_000116_210--Hb_023344_060 Hb_000953_050 Hb_000953_050 Hb_005496_180--Hb_000953_050 Hb_002572_050 Hb_002572_050 Hb_005496_180--Hb_002572_050 Hb_005496_180--Hb_000805_230 Hb_002053_130 Hb_002053_130 Hb_005496_180--Hb_002053_130 Hb_005496_180--Hb_002915_070 Hb_008511_100 Hb_008511_100 Hb_001288_070--Hb_008511_100 Hb_001288_070--Hb_000805_230 Hb_000866_090 Hb_000866_090 Hb_001288_070--Hb_000866_090 Hb_001288_070--Hb_002915_070 Hb_002387_040 Hb_002387_040 Hb_002154_020--Hb_002387_040 Hb_002249_050 Hb_002249_050 Hb_002154_020--Hb_002249_050 Hb_002477_120 Hb_002477_120 Hb_002154_020--Hb_002477_120 Hb_002400_160 Hb_002400_160 Hb_002154_020--Hb_002400_160 Hb_002154_020--Hb_004032_310 Hb_019863_060 Hb_019863_060 Hb_002154_020--Hb_019863_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0196 10.7328 2.14714 3.31805 0.666428 0.932027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.960981 1.72144 1.98361 3.372 3.04268

CAGE analysis