Hb_023344_060

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig23344: 77450-82603
Sequence    

Annotation

kegg
ID rcu:RCOM_0542160
description Auxin-responsive protein IAA13, putative
nr
ID XP_012085222.1
description PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
swissprot
ID Q38829
description Auxin-responsive protein IAA11 OS=Arabidopsis thaliana GN=IAA11 PE=1 SV=1
trembl
ID A0A067JRE7
description Auxin-responsive protein OS=Jatropha curcas GN=JCGZ_17620 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-responsive protein iaa11 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24519: 77605-82600 , PASA_asmbl_24520: 77537-82539
cDNA
(Sanger)
(ID:Location)		 046_P01.ab1: 77605-81243

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023344_060 0.0 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
2 Hb_000116_210 0.116137968 - - PREDICTED: uncharacterized protein LOC105628567 [Jatropha curcas]
3 Hb_012286_090 0.1378822771 - - PREDICTED: lipid phosphate phosphatase delta [Jatropha curcas]
4 Hb_000111_370 0.1394574695 - - PREDICTED: cation/H(+) antiporter 2-like [Jatropha curcas]
5 Hb_009372_020 0.1446734818 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
6 Hb_004724_330 0.1465760801 - - Capsanthin/capsorubin synthase, chloroplast precursor, putative [Ricinus communis]
7 Hb_000805_190 0.1492958865 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
8 Hb_000941_080 0.1495394193 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 7-like isoform X3 [Populus euphratica]
9 Hb_001195_350 0.1522453697 - - hypothetical protein JCGZ_04423 [Jatropha curcas]
10 Hb_000735_080 0.1536977647 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
11 Hb_002876_250 0.1555104357 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
12 Hb_010068_070 0.1580868681 - - calcium-dependent protein kinase, putative [Ricinus communis]
13 Hb_025708_020 0.1592318633 - - receptor protein kinase, putative [Ricinus communis]
14 Hb_000156_090 0.1607264028 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
15 Hb_000417_300 0.1609996791 - - PREDICTED: probable alpha,alpha-trehalose-phosphate synthase [UDP-forming] 7 [Jatropha curcas]
16 Hb_000270_110 0.1612879257 - - PREDICTED: calcium-dependent protein kinase 10 [Jatropha curcas]
17 Hb_004680_010 0.1616935247 - - PREDICTED: uncharacterized protein LOC105636246 isoform X1 [Jatropha curcas]
18 Hb_033363_010 0.1617345681 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
19 Hb_000735_140 0.1619036651 - - 3-glucanase family protein [Populus trichocarpa]
20 Hb_069591_010 0.1625057753 - - -

Gene co-expression network

sample Hb_023344_060 Hb_023344_060 Hb_000116_210 Hb_000116_210 Hb_023344_060--Hb_000116_210 Hb_012286_090 Hb_012286_090 Hb_023344_060--Hb_012286_090 Hb_000111_370 Hb_000111_370 Hb_023344_060--Hb_000111_370 Hb_009372_020 Hb_009372_020 Hb_023344_060--Hb_009372_020 Hb_004724_330 Hb_004724_330 Hb_023344_060--Hb_004724_330 Hb_000805_190 Hb_000805_190 Hb_023344_060--Hb_000805_190 Hb_002876_250 Hb_002876_250 Hb_000116_210--Hb_002876_250 Hb_000805_230 Hb_000805_230 Hb_000116_210--Hb_000805_230 Hb_001288_070 Hb_001288_070 Hb_000116_210--Hb_001288_070 Hb_000120_160 Hb_000120_160 Hb_000116_210--Hb_000120_160 Hb_002154_020 Hb_002154_020 Hb_000116_210--Hb_002154_020 Hb_069591_010 Hb_069591_010 Hb_012286_090--Hb_069591_010 Hb_000809_020 Hb_000809_020 Hb_012286_090--Hb_000809_020 Hb_024404_020 Hb_024404_020 Hb_012286_090--Hb_024404_020 Hb_000815_240 Hb_000815_240 Hb_012286_090--Hb_000815_240 Hb_000029_190 Hb_000029_190 Hb_012286_090--Hb_000029_190 Hb_000111_370--Hb_009372_020 Hb_033363_010 Hb_033363_010 Hb_000111_370--Hb_033363_010 Hb_000015_200 Hb_000015_200 Hb_000111_370--Hb_000015_200 Hb_004375_110 Hb_004375_110 Hb_000111_370--Hb_004375_110 Hb_003964_110 Hb_003964_110 Hb_000111_370--Hb_003964_110 Hb_004680_010 Hb_004680_010 Hb_000111_370--Hb_004680_010 Hb_009372_020--Hb_004375_110 Hb_060094_010 Hb_060094_010 Hb_009372_020--Hb_060094_010 Hb_010068_070 Hb_010068_070 Hb_009372_020--Hb_010068_070 Hb_008165_020 Hb_008165_020 Hb_009372_020--Hb_008165_020 Hb_009372_020--Hb_003964_110 Hb_000200_170 Hb_000200_170 Hb_004724_330--Hb_000200_170 Hb_002849_070 Hb_002849_070 Hb_004724_330--Hb_002849_070 Hb_143766_030 Hb_143766_030 Hb_004724_330--Hb_143766_030 Hb_000056_280 Hb_000056_280 Hb_004724_330--Hb_000056_280 Hb_000056_080 Hb_000056_080 Hb_004724_330--Hb_000056_080 Hb_000735_140 Hb_000735_140 Hb_004724_330--Hb_000735_140 Hb_000805_190--Hb_000056_280 Hb_000059_130 Hb_000059_130 Hb_000805_190--Hb_000059_130 Hb_000072_020 Hb_000072_020 Hb_000805_190--Hb_000072_020 Hb_002235_310 Hb_002235_310 Hb_000805_190--Hb_002235_310 Hb_000110_300 Hb_000110_300 Hb_000805_190--Hb_000110_300 Hb_000805_190--Hb_033363_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.58342 53.4593 25.4091 37.0089 6.86608 6.94298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.95887 5.43898 26.7638 24.8898 10.9237

CAGE analysis