Hb_000809_020

Information

Type desease resistance
Description Gene Name: RPW8
Location Contig809: 9187-20919
Sequence    

Annotation

kegg
ID rcu:RCOM_0602300
description leucine-rich repeat-containing protein, putative
nr
ID XP_002522332.1
description leucine-rich repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9FKZ1
description Probable disease resistance protein At5g66900 OS=Arabidopsis thaliana GN=At5g66900 PE=3 SV=1
trembl
ID B9S8L3
description Leucine-rich repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0602300 PE=4 SV=1
Gene Ontology
ID GO:0043531
description probable disease resistance protein at5g66900

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59130: 9483-10236 , PASA_asmbl_59131: 10946-12993 , PASA_asmbl_59132: 13041-13538 , PASA_asmbl_59133: 9483-20949
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000809_020 0.0 desease resistance Gene Name: RPW8 leucine-rich repeat-containing protein, putative [Ricinus communis]
2 Hb_007527_010 0.0806994827 - - conserved hypothetical protein [Ricinus communis]
3 Hb_011618_070 0.0899182041 - - NMDA receptor-regulated protein [Medicago truncatula]
4 Hb_000243_260 0.1178453147 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
5 Hb_111552_010 0.1245075243 - - PREDICTED: ATP sulfurylase 2 [Jatropha curcas]
6 Hb_012539_060 0.1265462888 - - PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
7 Hb_012632_010 0.1274100202 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]
8 Hb_004774_090 0.1276162489 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
9 Hb_021510_010 0.1281578381 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
10 Hb_000137_020 0.1290630644 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]
11 Hb_001357_200 0.1310970891 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
12 Hb_001828_170 0.1313849277 - - PREDICTED: protein TPLATE [Jatropha curcas]
13 Hb_002631_210 0.1317504805 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
14 Hb_002539_070 0.1318139322 - - PREDICTED: pentatricopeptide repeat-containing protein At1g26460, mitochondrial [Jatropha curcas]
15 Hb_023344_160 0.133739404 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
16 Hb_005018_020 0.1349726634 - - PREDICTED: pentatricopeptide repeat-containing protein At1g07740, mitochondrial [Jatropha curcas]
17 Hb_000206_160 0.1365702778 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
18 Hb_002675_130 0.1370062711 - - PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform X1 [Jatropha curcas]
19 Hb_024404_020 0.1374830831 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
20 Hb_000025_350 0.1377259673 - - PREDICTED: rho GTPase-activating protein 7 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000809_020 Hb_000809_020 Hb_007527_010 Hb_007527_010 Hb_000809_020--Hb_007527_010 Hb_011618_070 Hb_011618_070 Hb_000809_020--Hb_011618_070 Hb_000243_260 Hb_000243_260 Hb_000809_020--Hb_000243_260 Hb_111552_010 Hb_111552_010 Hb_000809_020--Hb_111552_010 Hb_012539_060 Hb_012539_060 Hb_000809_020--Hb_012539_060 Hb_012632_010 Hb_012632_010 Hb_000809_020--Hb_012632_010 Hb_001357_200 Hb_001357_200 Hb_007527_010--Hb_001357_200 Hb_007527_010--Hb_011618_070 Hb_007527_010--Hb_111552_010 Hb_004774_090 Hb_004774_090 Hb_007527_010--Hb_004774_090 Hb_001014_070 Hb_001014_070 Hb_007527_010--Hb_001014_070 Hb_011618_070--Hb_000243_260 Hb_001488_020 Hb_001488_020 Hb_011618_070--Hb_001488_020 Hb_003758_010 Hb_003758_010 Hb_011618_070--Hb_003758_010 Hb_002631_210 Hb_002631_210 Hb_011618_070--Hb_002631_210 Hb_002042_050 Hb_002042_050 Hb_011618_070--Hb_002042_050 Hb_000206_160 Hb_000206_160 Hb_011618_070--Hb_000206_160 Hb_000243_260--Hb_002042_050 Hb_020178_040 Hb_020178_040 Hb_000243_260--Hb_020178_040 Hb_011883_020 Hb_011883_020 Hb_000243_260--Hb_011883_020 Hb_000243_260--Hb_003758_010 Hb_000243_260--Hb_002631_210 Hb_111552_010--Hb_004774_090 Hb_001178_030 Hb_001178_030 Hb_111552_010--Hb_001178_030 Hb_000452_030 Hb_000452_030 Hb_111552_010--Hb_000452_030 Hb_000586_020 Hb_000586_020 Hb_111552_010--Hb_000586_020 Hb_006846_170 Hb_006846_170 Hb_111552_010--Hb_006846_170 Hb_000956_040 Hb_000956_040 Hb_111552_010--Hb_000956_040 Hb_012539_060--Hb_012632_010 Hb_000039_150 Hb_000039_150 Hb_012539_060--Hb_000039_150 Hb_001377_350 Hb_001377_350 Hb_012539_060--Hb_001377_350 Hb_006501_090 Hb_006501_090 Hb_012539_060--Hb_006501_090 Hb_000537_050 Hb_000537_050 Hb_012539_060--Hb_000537_050 Hb_020378_030 Hb_020378_030 Hb_012539_060--Hb_020378_030 Hb_003058_260 Hb_003058_260 Hb_012632_010--Hb_003058_260 Hb_002071_070 Hb_002071_070 Hb_012632_010--Hb_002071_070 Hb_002890_130 Hb_002890_130 Hb_012632_010--Hb_002890_130 Hb_000856_040 Hb_000856_040 Hb_012632_010--Hb_000856_040 Hb_002830_010 Hb_002830_010 Hb_012632_010--Hb_002830_010 Hb_004374_110 Hb_004374_110 Hb_012632_010--Hb_004374_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.41073 6.85356 6.85636 4.72715 1.79591 3.88162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.3315 1.68213 7.33857 5.48676 5.99807

CAGE analysis