Hb_012539_060

Information

Type -
Description -
Location Contig12539: 74748-81224
Sequence    

Annotation

kegg
ID rcu:RCOM_0802530
description hypothetical protein
nr
ID XP_012077423.1
description PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
swissprot
ID Q9LYD9
description Protein EMBRYONIC FLOWER 1 OS=Arabidopsis thaliana GN=EMF1 PE=1 SV=1
trembl
ID A0A067KPJ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07766 PE=4 SV=1
Gene Ontology
ID GO:0044699
description protein embryonic flower 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07791: 74914-77058 , PASA_asmbl_07792: 77475-78042 , PASA_asmbl_07794: 78724-79817 , PASA_asmbl_07796: 81042-81228
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012539_060 0.0 - - PREDICTED: protein EMBRYONIC FLOWER 1 [Jatropha curcas]
2 Hb_012632_010 0.0789518872 - - PREDICTED: uncharacterized protein LOC105640019 [Jatropha curcas]
3 Hb_000039_150 0.0804400936 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X1 [Jatropha curcas]
4 Hb_001377_350 0.0817455618 - - PREDICTED: exportin-2 [Jatropha curcas]
5 Hb_006501_090 0.0861163163 - - PREDICTED: golgin candidate 1 [Jatropha curcas]
6 Hb_000537_050 0.0874671442 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
7 Hb_020378_030 0.0880346874 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
8 Hb_000003_100 0.088952687 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]
9 Hb_000088_050 0.0893397642 - - PREDICTED: threonylcarbamoyladenosine tRNA methylthiotransferase [Jatropha curcas]
10 Hb_001655_030 0.0913641731 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
11 Hb_002890_130 0.091885704 - - tip120, putative [Ricinus communis]
12 Hb_007747_040 0.0919821189 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
13 Hb_004374_110 0.0926902105 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
14 Hb_001635_120 0.0932416541 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]
15 Hb_008959_010 0.0937815371 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001754_040 0.0946353011 transcription factor TF Family: TRAF PREDICTED: uncharacterized protein LOC105643434 [Jatropha curcas]
17 Hb_002411_110 0.0949897092 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
18 Hb_005563_060 0.0952645397 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
19 Hb_000181_340 0.0955419065 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
20 Hb_003168_110 0.0956234449 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 1 [Jatropha curcas]

Gene co-expression network

sample Hb_012539_060 Hb_012539_060 Hb_012632_010 Hb_012632_010 Hb_012539_060--Hb_012632_010 Hb_000039_150 Hb_000039_150 Hb_012539_060--Hb_000039_150 Hb_001377_350 Hb_001377_350 Hb_012539_060--Hb_001377_350 Hb_006501_090 Hb_006501_090 Hb_012539_060--Hb_006501_090 Hb_000537_050 Hb_000537_050 Hb_012539_060--Hb_000537_050 Hb_020378_030 Hb_020378_030 Hb_012539_060--Hb_020378_030 Hb_003058_260 Hb_003058_260 Hb_012632_010--Hb_003058_260 Hb_002071_070 Hb_002071_070 Hb_012632_010--Hb_002071_070 Hb_002890_130 Hb_002890_130 Hb_012632_010--Hb_002890_130 Hb_000856_040 Hb_000856_040 Hb_012632_010--Hb_000856_040 Hb_002830_010 Hb_002830_010 Hb_012632_010--Hb_002830_010 Hb_004374_110 Hb_004374_110 Hb_012632_010--Hb_004374_110 Hb_008959_010 Hb_008959_010 Hb_000039_150--Hb_008959_010 Hb_011228_010 Hb_011228_010 Hb_000039_150--Hb_011228_010 Hb_002769_030 Hb_002769_030 Hb_000039_150--Hb_002769_030 Hb_000039_150--Hb_006501_090 Hb_007426_110 Hb_007426_110 Hb_000039_150--Hb_007426_110 Hb_007765_100 Hb_007765_100 Hb_000039_150--Hb_007765_100 Hb_000809_230 Hb_000809_230 Hb_001377_350--Hb_000809_230 Hb_002749_060 Hb_002749_060 Hb_001377_350--Hb_002749_060 Hb_001377_350--Hb_002890_130 Hb_000261_480 Hb_000261_480 Hb_001377_350--Hb_000261_480 Hb_003544_050 Hb_003544_050 Hb_001377_350--Hb_003544_050 Hb_000003_100 Hb_000003_100 Hb_001377_350--Hb_000003_100 Hb_001655_030 Hb_001655_030 Hb_006501_090--Hb_001655_030 Hb_000035_170 Hb_000035_170 Hb_006501_090--Hb_000035_170 Hb_109980_010 Hb_109980_010 Hb_006501_090--Hb_109980_010 Hb_001518_080 Hb_001518_080 Hb_006501_090--Hb_001518_080 Hb_001279_030 Hb_001279_030 Hb_006501_090--Hb_001279_030 Hb_004586_220 Hb_004586_220 Hb_000537_050--Hb_004586_220 Hb_000592_030 Hb_000592_030 Hb_000537_050--Hb_000592_030 Hb_000537_050--Hb_020378_030 Hb_012092_060 Hb_012092_060 Hb_000537_050--Hb_012092_060 Hb_009296_040 Hb_009296_040 Hb_000537_050--Hb_009296_040 Hb_000537_050--Hb_002890_130 Hb_020378_030--Hb_004586_220 Hb_000590_050 Hb_000590_050 Hb_020378_030--Hb_000590_050 Hb_000441_220 Hb_000441_220 Hb_020378_030--Hb_000441_220 Hb_001814_030 Hb_001814_030 Hb_020378_030--Hb_001814_030 Hb_020378_030--Hb_000592_030 Hb_002732_040 Hb_002732_040 Hb_020378_030--Hb_002732_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.63756 2.55434 2.20372 1.75953 1.45889 2.55904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.17384 0.923785 2.63277 2.42808 2.97197

CAGE analysis