Hb_012286_090

Information

Type -
Description -
Location Contig12286: 86058-90615
Sequence    

Annotation

kegg
ID rcu:RCOM_0041070
description sphingosine-1-phosphate phosphohydrolase, putative
nr
ID XP_012090848.1
description PREDICTED: lipid phosphate phosphatase delta [Jatropha curcas]
swissprot
ID Q9M2G7
description Lipid phosphate phosphatase delta OS=Arabidopsis thaliana GN=LPPD PE=2 SV=1
trembl
ID A0A067JDG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03039 PE=4 SV=1
Gene Ontology
ID GO:0005789
description phosphatidic acid phosphatase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06940: 86120-90602
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012286_090 0.0 - - PREDICTED: lipid phosphate phosphatase delta [Jatropha curcas]
2 Hb_023344_060 0.1378822771 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA11 isoform X2 [Jatropha curcas]
3 Hb_069591_010 0.1408992768 - - -
4 Hb_000809_020 0.1420668197 desease resistance Gene Name: RPW8 leucine-rich repeat-containing protein, putative [Ricinus communis]
5 Hb_024404_020 0.1508727499 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
6 Hb_000815_240 0.1528120371 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
7 Hb_000029_190 0.1540251307 - - hypothetical protein CISIN_1g025338mg [Citrus sinensis]
8 Hb_000029_170 0.1570279249 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 89-like [Jatropha curcas]
9 Hb_001140_090 0.1573851566 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000270_520 0.157599486 - - PREDICTED: alpha-N-acetylglucosaminidase-like isoform X1 [Jatropha curcas]
11 Hb_000137_020 0.1586139499 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]
12 Hb_001114_110 0.1591303192 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
13 Hb_001329_200 0.1597145358 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
14 Hb_010068_070 0.160455863 - - calcium-dependent protein kinase, putative [Ricinus communis]
15 Hb_006006_040 0.1620731979 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
16 Hb_001828_170 0.1629002412 - - PREDICTED: protein TPLATE [Jatropha curcas]
17 Hb_022425_060 0.1635296129 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
18 Hb_084490_010 0.1640756182 - - PREDICTED: protein root UVB sensitive 6 isoform X2 [Jatropha curcas]
19 Hb_005188_030 0.1655486311 - - amino acid transporter, putative [Ricinus communis]
20 Hb_000347_400 0.1657304899 - - PREDICTED: probable GTP diphosphokinase RSH2, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_012286_090 Hb_012286_090 Hb_023344_060 Hb_023344_060 Hb_012286_090--Hb_023344_060 Hb_069591_010 Hb_069591_010 Hb_012286_090--Hb_069591_010 Hb_000809_020 Hb_000809_020 Hb_012286_090--Hb_000809_020 Hb_024404_020 Hb_024404_020 Hb_012286_090--Hb_024404_020 Hb_000815_240 Hb_000815_240 Hb_012286_090--Hb_000815_240 Hb_000029_190 Hb_000029_190 Hb_012286_090--Hb_000029_190 Hb_000116_210 Hb_000116_210 Hb_023344_060--Hb_000116_210 Hb_000111_370 Hb_000111_370 Hb_023344_060--Hb_000111_370 Hb_009372_020 Hb_009372_020 Hb_023344_060--Hb_009372_020 Hb_004724_330 Hb_004724_330 Hb_023344_060--Hb_004724_330 Hb_000805_190 Hb_000805_190 Hb_023344_060--Hb_000805_190 Hb_001140_090 Hb_001140_090 Hb_069591_010--Hb_001140_090 Hb_000137_020 Hb_000137_020 Hb_069591_010--Hb_000137_020 Hb_008725_050 Hb_008725_050 Hb_069591_010--Hb_008725_050 Hb_000156_090 Hb_000156_090 Hb_069591_010--Hb_000156_090 Hb_011618_070 Hb_011618_070 Hb_069591_010--Hb_011618_070 Hb_003018_030 Hb_003018_030 Hb_069591_010--Hb_003018_030 Hb_007527_010 Hb_007527_010 Hb_000809_020--Hb_007527_010 Hb_000809_020--Hb_011618_070 Hb_000243_260 Hb_000243_260 Hb_000809_020--Hb_000243_260 Hb_111552_010 Hb_111552_010 Hb_000809_020--Hb_111552_010 Hb_012539_060 Hb_012539_060 Hb_000809_020--Hb_012539_060 Hb_012632_010 Hb_012632_010 Hb_000809_020--Hb_012632_010 Hb_003037_020 Hb_003037_020 Hb_024404_020--Hb_003037_020 Hb_000152_320 Hb_000152_320 Hb_024404_020--Hb_000152_320 Hb_000549_040 Hb_000549_040 Hb_024404_020--Hb_000549_040 Hb_010368_060 Hb_010368_060 Hb_024404_020--Hb_010368_060 Hb_027472_070 Hb_027472_070 Hb_024404_020--Hb_027472_070 Hb_007904_130 Hb_007904_130 Hb_024404_020--Hb_007904_130 Hb_000390_250 Hb_000390_250 Hb_000815_240--Hb_000390_250 Hb_000991_040 Hb_000991_040 Hb_000815_240--Hb_000991_040 Hb_005015_080 Hb_005015_080 Hb_000815_240--Hb_005015_080 Hb_000329_230 Hb_000329_230 Hb_000815_240--Hb_000329_230 Hb_000395_040 Hb_000395_040 Hb_000815_240--Hb_000395_040 Hb_084490_010 Hb_084490_010 Hb_000815_240--Hb_084490_010 Hb_000227_160 Hb_000227_160 Hb_000029_190--Hb_000227_160 Hb_012262_030 Hb_012262_030 Hb_000029_190--Hb_012262_030 Hb_006006_040 Hb_006006_040 Hb_000029_190--Hb_006006_040 Hb_008289_040 Hb_008289_040 Hb_000029_190--Hb_008289_040 Hb_000012_240 Hb_000012_240 Hb_000029_190--Hb_000012_240 Hb_023344_150 Hb_023344_150 Hb_000029_190--Hb_023344_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.2193 44.7627 34.4576 41.1277 7.92753 24.7366
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.74988 8.48812 37.9145 29.9795 12.2528

CAGE analysis