Hb_010368_060

Information

Type -
Description -
Location Contig10368: 40176-44611
Sequence    

Annotation

kegg
ID rcu:RCOM_1442470
description hypothetical protein
nr
ID XP_002512751.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RGP2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1442470 PE=4 SV=1
Gene Ontology
ID GO:0046872
description mucin-5ac-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01389: 40303-40871
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010368_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012490_080 0.1024413095 - - threonine synthase, putative [Ricinus communis]
3 Hb_006938_080 0.1067675423 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
4 Hb_000028_180 0.107069083 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
5 Hb_000212_310 0.1086590197 - - hypothetical protein JCGZ_24350 [Jatropha curcas]
6 Hb_011016_050 0.1144473541 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
7 Hb_000072_120 0.1155920262 - - serine/threonine protein kinase, putative [Ricinus communis]
8 Hb_010874_020 0.1174984294 - - PREDICTED: uncharacterized protein LOC105636745 [Jatropha curcas]
9 Hb_000406_140 0.1176051159 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000646_050 0.1182528128 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
11 Hb_001252_120 0.1191649809 - - PREDICTED: delta-1-pyrroline-5-carboxylate synthase-like [Gossypium raimondii]
12 Hb_005137_040 0.1195062884 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
13 Hb_000270_520 0.119801854 - - PREDICTED: alpha-N-acetylglucosaminidase-like isoform X1 [Jatropha curcas]
14 Hb_000723_200 0.1198589421 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105642236 isoform X1 [Jatropha curcas]
15 Hb_024404_020 0.121237618 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
16 Hb_000703_150 0.1217226092 - - PREDICTED: F-box/LRR-repeat MAX2 homolog A [Jatropha curcas]
17 Hb_000739_100 0.1219221137 - - ku P80 DNA helicase, putative [Ricinus communis]
18 Hb_004724_150 0.1225975413 - - expressed protein, putative [Ricinus communis]
19 Hb_000926_090 0.1226523956 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
20 Hb_002169_050 0.1236495561 - - PREDICTED: inositol 1,3,4-trisphosphate 5/6-kinase 4 [Jatropha curcas]

Gene co-expression network

sample Hb_010368_060 Hb_010368_060 Hb_012490_080 Hb_012490_080 Hb_010368_060--Hb_012490_080 Hb_006938_080 Hb_006938_080 Hb_010368_060--Hb_006938_080 Hb_000028_180 Hb_000028_180 Hb_010368_060--Hb_000028_180 Hb_000212_310 Hb_000212_310 Hb_010368_060--Hb_000212_310 Hb_011016_050 Hb_011016_050 Hb_010368_060--Hb_011016_050 Hb_000072_120 Hb_000072_120 Hb_010368_060--Hb_000072_120 Hb_000107_490 Hb_000107_490 Hb_012490_080--Hb_000107_490 Hb_000406_140 Hb_000406_140 Hb_012490_080--Hb_000406_140 Hb_012490_080--Hb_006938_080 Hb_000866_170 Hb_000866_170 Hb_012490_080--Hb_000866_170 Hb_000890_210 Hb_000890_210 Hb_012490_080--Hb_000890_210 Hb_000646_050 Hb_000646_050 Hb_012490_080--Hb_000646_050 Hb_000245_040 Hb_000245_040 Hb_006938_080--Hb_000245_040 Hb_002809_050 Hb_002809_050 Hb_006938_080--Hb_002809_050 Hb_006938_080--Hb_000646_050 Hb_006938_080--Hb_000866_170 Hb_006938_080--Hb_000107_490 Hb_000395_190 Hb_000395_190 Hb_006938_080--Hb_000395_190 Hb_001252_120 Hb_001252_120 Hb_000028_180--Hb_001252_120 Hb_004324_130 Hb_004324_130 Hb_000028_180--Hb_004324_130 Hb_007479_040 Hb_007479_040 Hb_000028_180--Hb_007479_040 Hb_022115_020 Hb_022115_020 Hb_000028_180--Hb_022115_020 Hb_004724_150 Hb_004724_150 Hb_000028_180--Hb_004724_150 Hb_002481_080 Hb_002481_080 Hb_000028_180--Hb_002481_080 Hb_006660_010 Hb_006660_010 Hb_000212_310--Hb_006660_010 Hb_002169_050 Hb_002169_050 Hb_000212_310--Hb_002169_050 Hb_007904_160 Hb_007904_160 Hb_000212_310--Hb_007904_160 Hb_002909_140 Hb_002909_140 Hb_000212_310--Hb_002909_140 Hb_000212_380 Hb_000212_380 Hb_000212_310--Hb_000212_380 Hb_004676_010 Hb_004676_010 Hb_000212_310--Hb_004676_010 Hb_000614_240 Hb_000614_240 Hb_011016_050--Hb_000614_240 Hb_000140_210 Hb_000140_210 Hb_011016_050--Hb_000140_210 Hb_009296_040 Hb_009296_040 Hb_011016_050--Hb_009296_040 Hb_004030_080 Hb_004030_080 Hb_011016_050--Hb_004030_080 Hb_010142_020 Hb_010142_020 Hb_011016_050--Hb_010142_020 Hb_000083_120 Hb_000083_120 Hb_011016_050--Hb_000083_120 Hb_001473_160 Hb_001473_160 Hb_000072_120--Hb_001473_160 Hb_000329_230 Hb_000329_230 Hb_000072_120--Hb_000329_230 Hb_003906_200 Hb_003906_200 Hb_000072_120--Hb_003906_200 Hb_001674_030 Hb_001674_030 Hb_000072_120--Hb_001674_030 Hb_000072_120--Hb_004030_080 Hb_001679_050 Hb_001679_050 Hb_000072_120--Hb_001679_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.722953 0.913049 0.65835 0.952627 0.478863 0.807622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.743962 0.390258 1.66854 1.12484 0.51663

CAGE analysis