Hb_000991_040

Information

Type -
Description -
Location Contig991: 55411-56505
Sequence    

Annotation

kegg
ID tcc:TCM_021900
description Zinc finger family protein, putative
nr
ID XP_012459945.1
description PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
swissprot
ID P0CH30
description E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=1 SV=1
trembl
ID A0A0D2S0W2
description Gossypium raimondii chromosome 12, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_012G105100 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ring1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64772: 55613-56617
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000991_040 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
2 Hb_000622_340 0.0913481224 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 [Jatropha curcas]
3 Hb_000260_600 0.0937730999 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000815_240 0.0951433019 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
5 Hb_008937_010 0.1015532399 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80A2 isoform X2 [Jatropha curcas]
6 Hb_000390_250 0.1053160171 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
7 Hb_000322_070 0.1063955988 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
8 Hb_000890_030 0.1064466382 - - plastid CUL1 [Hevea brasiliensis]
9 Hb_003181_040 0.1073993215 - - PREDICTED: uncharacterized protein LOC105647655 isoform X1 [Jatropha curcas]
10 Hb_003097_120 0.1075570077 - - PREDICTED: cytokinin dehydrogenase 6 [Jatropha curcas]
11 Hb_000418_010 0.1076508465 - - PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Jatropha curcas]
12 Hb_000931_020 0.1097423503 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
13 Hb_005381_020 0.109855956 - - PREDICTED: uncharacterized protein LOC105630417 [Jatropha curcas]
14 Hb_017948_030 0.1100013288 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
15 Hb_000009_400 0.110436473 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
16 Hb_001856_220 0.1119087012 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000395_040 0.1129536257 - - PREDICTED: uncharacterized protein LOC105645576 [Jatropha curcas]
18 Hb_162060_010 0.114332402 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005015_080 0.1143934953 - - PREDICTED: shikimate kinase 1, chloroplastic [Jatropha curcas]
20 Hb_000805_210 0.1145888164 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]

Gene co-expression network

sample Hb_000991_040 Hb_000991_040 Hb_000622_340 Hb_000622_340 Hb_000991_040--Hb_000622_340 Hb_000260_600 Hb_000260_600 Hb_000991_040--Hb_000260_600 Hb_000815_240 Hb_000815_240 Hb_000991_040--Hb_000815_240 Hb_008937_010 Hb_008937_010 Hb_000991_040--Hb_008937_010 Hb_000390_250 Hb_000390_250 Hb_000991_040--Hb_000390_250 Hb_000322_070 Hb_000322_070 Hb_000991_040--Hb_000322_070 Hb_000931_020 Hb_000931_020 Hb_000622_340--Hb_000931_020 Hb_000890_030 Hb_000890_030 Hb_000622_340--Hb_000890_030 Hb_012760_030 Hb_012760_030 Hb_000622_340--Hb_012760_030 Hb_000622_340--Hb_008937_010 Hb_010407_060 Hb_010407_060 Hb_000622_340--Hb_010407_060 Hb_000140_350 Hb_000140_350 Hb_000260_600--Hb_000140_350 Hb_000890_230 Hb_000890_230 Hb_000260_600--Hb_000890_230 Hb_000260_600--Hb_000322_070 Hb_000009_400 Hb_000009_400 Hb_000260_600--Hb_000009_400 Hb_003617_020 Hb_003617_020 Hb_000260_600--Hb_003617_020 Hb_000815_240--Hb_000390_250 Hb_005015_080 Hb_005015_080 Hb_000815_240--Hb_005015_080 Hb_000329_230 Hb_000329_230 Hb_000815_240--Hb_000329_230 Hb_000395_040 Hb_000395_040 Hb_000815_240--Hb_000395_040 Hb_084490_010 Hb_084490_010 Hb_000815_240--Hb_084490_010 Hb_008937_010--Hb_010407_060 Hb_001489_100 Hb_001489_100 Hb_008937_010--Hb_001489_100 Hb_008253_020 Hb_008253_020 Hb_008937_010--Hb_008253_020 Hb_000120_910 Hb_000120_910 Hb_008937_010--Hb_000120_910 Hb_001856_220 Hb_001856_220 Hb_008937_010--Hb_001856_220 Hb_000402_230 Hb_000402_230 Hb_008937_010--Hb_000402_230 Hb_000046_570 Hb_000046_570 Hb_000390_250--Hb_000046_570 Hb_000390_250--Hb_000329_230 Hb_001863_360 Hb_001863_360 Hb_000390_250--Hb_001863_360 Hb_005381_020 Hb_005381_020 Hb_000390_250--Hb_005381_020 Hb_003929_170 Hb_003929_170 Hb_000390_250--Hb_003929_170 Hb_001366_090 Hb_001366_090 Hb_000390_250--Hb_001366_090 Hb_000322_070--Hb_000009_400 Hb_000322_070--Hb_000046_570 Hb_162060_010 Hb_162060_010 Hb_000322_070--Hb_162060_010 Hb_000322_070--Hb_003617_020 Hb_000322_070--Hb_008253_020 Hb_000322_070--Hb_000390_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.70789 10.1824 6.44182 13.9049 5.37557 4.89282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.53454 3.35041 4.22237 2.98955 3.52146

CAGE analysis