Hb_000622_340

Information

Type -
Description -
Location Contig622: 275776-278607
Sequence    

Annotation

kegg
ID rcu:RCOM_1617170
description hypothetical protein
nr
ID XP_012083284.1
description PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 [Jatropha curcas]
swissprot
ID Q9M146
description UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 OS=Arabidopsis thaliana GN=MGP4 PE=2 SV=1
trembl
ID A0A067K0E6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14314 PE=4 SV=1
Gene Ontology
ID GO:0016757
description udp-d-xylose:l-fucose alpha- -d-xylosyltransferase mgp4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51589: 275800-278657
cDNA
(Sanger)
(ID:Location)		 046_I17.ab1: 277548-278657

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000622_340 0.0 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 [Jatropha curcas]
2 Hb_000931_020 0.0773738944 - - PREDICTED: uncharacterized protein LOC105649774 isoform X1 [Jatropha curcas]
3 Hb_000890_030 0.0859597379 - - plastid CUL1 [Hevea brasiliensis]
4 Hb_000991_040 0.0913481224 - - PREDICTED: E3 ubiquitin-protein ligase RING1-like [Gossypium raimondii]
5 Hb_012760_030 0.0964523926 - - PREDICTED: probable prolyl 4-hydroxylase 10 [Gossypium raimondii]
6 Hb_008937_010 0.0970990257 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80A2 isoform X2 [Jatropha curcas]
7 Hb_010407_060 0.0988580963 - - PREDICTED: probable methyltransferase PMT3 [Jatropha curcas]
8 Hb_001623_110 0.099703462 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
9 Hb_027654_020 0.1006441707 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
10 Hb_000580_030 0.1016118153 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
11 Hb_001114_110 0.1020270138 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
12 Hb_000098_050 0.1022362484 - - BnaCnng11900D [Brassica napus]
13 Hb_044486_020 0.1041091716 - - CASTOR protein [Glycine max]
14 Hb_001454_230 0.1077922899 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
15 Hb_017948_030 0.10887361 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
16 Hb_007409_040 0.1090889894 - - actin family protein [Populus trichocarpa]
17 Hb_121089_030 0.1097511341 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
18 Hb_000679_100 0.109992925 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
19 Hb_000322_070 0.110392623 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
20 Hb_000805_210 0.1108704449 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]

Gene co-expression network

sample Hb_000622_340 Hb_000622_340 Hb_000931_020 Hb_000931_020 Hb_000622_340--Hb_000931_020 Hb_000890_030 Hb_000890_030 Hb_000622_340--Hb_000890_030 Hb_000991_040 Hb_000991_040 Hb_000622_340--Hb_000991_040 Hb_012760_030 Hb_012760_030 Hb_000622_340--Hb_012760_030 Hb_008937_010 Hb_008937_010 Hb_000622_340--Hb_008937_010 Hb_010407_060 Hb_010407_060 Hb_000622_340--Hb_010407_060 Hb_003078_020 Hb_003078_020 Hb_000931_020--Hb_003078_020 Hb_001357_040 Hb_001357_040 Hb_000931_020--Hb_001357_040 Hb_000931_020--Hb_008937_010 Hb_000931_020--Hb_000991_040 Hb_000260_600 Hb_000260_600 Hb_000931_020--Hb_000260_600 Hb_000580_030 Hb_000580_030 Hb_000890_030--Hb_000580_030 Hb_000890_030--Hb_012760_030 Hb_016461_020 Hb_016461_020 Hb_000890_030--Hb_016461_020 Hb_000098_050 Hb_000098_050 Hb_000890_030--Hb_000098_050 Hb_044486_020 Hb_044486_020 Hb_000890_030--Hb_044486_020 Hb_000805_210 Hb_000805_210 Hb_000890_030--Hb_000805_210 Hb_000991_040--Hb_000260_600 Hb_000815_240 Hb_000815_240 Hb_000991_040--Hb_000815_240 Hb_000991_040--Hb_008937_010 Hb_000390_250 Hb_000390_250 Hb_000991_040--Hb_000390_250 Hb_000322_070 Hb_000322_070 Hb_000991_040--Hb_000322_070 Hb_000784_080 Hb_000784_080 Hb_012760_030--Hb_000784_080 Hb_001623_110 Hb_001623_110 Hb_012760_030--Hb_001623_110 Hb_000671_030 Hb_000671_030 Hb_012760_030--Hb_000671_030 Hb_007919_110 Hb_007919_110 Hb_012760_030--Hb_007919_110 Hb_004724_390 Hb_004724_390 Hb_012760_030--Hb_004724_390 Hb_008937_010--Hb_010407_060 Hb_001489_100 Hb_001489_100 Hb_008937_010--Hb_001489_100 Hb_008253_020 Hb_008253_020 Hb_008937_010--Hb_008253_020 Hb_000120_910 Hb_000120_910 Hb_008937_010--Hb_000120_910 Hb_001856_220 Hb_001856_220 Hb_008937_010--Hb_001856_220 Hb_000402_230 Hb_000402_230 Hb_008937_010--Hb_000402_230 Hb_001257_030 Hb_001257_030 Hb_010407_060--Hb_001257_030 Hb_010407_060--Hb_000120_910 Hb_004044_050 Hb_004044_050 Hb_010407_060--Hb_004044_050 Hb_027654_020 Hb_027654_020 Hb_010407_060--Hb_027654_020 Hb_022425_030 Hb_022425_030 Hb_010407_060--Hb_022425_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.35148 10.9088 8.02243 16.1178 7.85285 5.1905
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.05563 3.45126 6.04333 6.67653 4.98513

CAGE analysis