Hb_000029_190

Information

Type -
Description -
Location Contig29: 196044-197170
Sequence    

Annotation

kegg
ID -
description -
nr
ID KDO58271.1
description hypothetical protein CISIN_1g025338mg [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067F511
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g025338mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30362: 179443-196697
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000029_190 0.0 - - hypothetical protein CISIN_1g025338mg [Citrus sinensis]
2 Hb_000227_160 0.0726152225 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
3 Hb_012262_030 0.0877798694 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
4 Hb_006006_040 0.0946608838 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
5 Hb_008289_040 0.0953384062 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
6 Hb_000012_240 0.1006686504 - - PREDICTED: ferrochelatase-2, chloroplastic [Jatropha curcas]
7 Hb_023344_150 0.1007491434 - - PREDICTED: uncharacterized protein LOC105644462 [Jatropha curcas]
8 Hb_000926_260 0.1018422917 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000703_330 0.1023942835 - - conserved hypothetical protein [Ricinus communis]
10 Hb_026198_010 0.1024552268 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
11 Hb_000023_300 0.1024815451 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
12 Hb_000029_170 0.1025691456 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 89-like [Jatropha curcas]
13 Hb_000165_080 0.1038154599 - - PREDICTED: multiple inositol polyphosphate phosphatase 1 isoform X1 [Jatropha curcas]
14 Hb_007904_300 0.105226571 - - copine, putative [Ricinus communis]
15 Hb_027760_060 0.105743581 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
16 Hb_001328_080 0.106024914 - - PREDICTED: importin subunit alpha-1b [Jatropha curcas]
17 Hb_000173_130 0.1067910468 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
18 Hb_003020_100 0.1070052479 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
19 Hb_008748_030 0.1073665456 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000367_090 0.1078396077 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]

Gene co-expression network

sample Hb_000029_190 Hb_000029_190 Hb_000227_160 Hb_000227_160 Hb_000029_190--Hb_000227_160 Hb_012262_030 Hb_012262_030 Hb_000029_190--Hb_012262_030 Hb_006006_040 Hb_006006_040 Hb_000029_190--Hb_006006_040 Hb_008289_040 Hb_008289_040 Hb_000029_190--Hb_008289_040 Hb_000012_240 Hb_000012_240 Hb_000029_190--Hb_000012_240 Hb_023344_150 Hb_023344_150 Hb_000029_190--Hb_023344_150 Hb_008748_030 Hb_008748_030 Hb_000227_160--Hb_008748_030 Hb_028487_160 Hb_028487_160 Hb_000227_160--Hb_028487_160 Hb_000227_160--Hb_012262_030 Hb_000367_090 Hb_000367_090 Hb_000227_160--Hb_000367_090 Hb_000227_160--Hb_008289_040 Hb_000023_300 Hb_000023_300 Hb_012262_030--Hb_000023_300 Hb_004994_180 Hb_004994_180 Hb_012262_030--Hb_004994_180 Hb_189216_010 Hb_189216_010 Hb_012262_030--Hb_189216_010 Hb_012262_030--Hb_008748_030 Hb_001454_230 Hb_001454_230 Hb_012262_030--Hb_001454_230 Hb_003020_100 Hb_003020_100 Hb_006006_040--Hb_003020_100 Hb_005215_020 Hb_005215_020 Hb_006006_040--Hb_005215_020 Hb_000085_450 Hb_000085_450 Hb_006006_040--Hb_000085_450 Hb_001329_200 Hb_001329_200 Hb_006006_040--Hb_001329_200 Hb_001328_080 Hb_001328_080 Hb_006006_040--Hb_001328_080 Hb_007409_040 Hb_007409_040 Hb_006006_040--Hb_007409_040 Hb_021165_010 Hb_021165_010 Hb_008289_040--Hb_021165_010 Hb_016172_030 Hb_016172_030 Hb_008289_040--Hb_016172_030 Hb_000173_130 Hb_000173_130 Hb_008289_040--Hb_000173_130 Hb_065500_020 Hb_065500_020 Hb_008289_040--Hb_065500_020 Hb_000406_210 Hb_000406_210 Hb_008289_040--Hb_000406_210 Hb_000703_330 Hb_000703_330 Hb_008289_040--Hb_000703_330 Hb_000711_010 Hb_000711_010 Hb_000012_240--Hb_000711_010 Hb_000666_010 Hb_000666_010 Hb_000012_240--Hb_000666_010 Hb_026198_010 Hb_026198_010 Hb_000012_240--Hb_026198_010 Hb_001956_060 Hb_001956_060 Hb_000012_240--Hb_001956_060 Hb_002349_030 Hb_002349_030 Hb_000012_240--Hb_002349_030 Hb_000704_030 Hb_000704_030 Hb_000012_240--Hb_000704_030 Hb_000983_050 Hb_000983_050 Hb_023344_150--Hb_000983_050 Hb_000731_200 Hb_000731_200 Hb_023344_150--Hb_000731_200 Hb_023344_150--Hb_001328_080 Hb_023344_150--Hb_000023_300 Hb_023344_150--Hb_008748_030 Hb_023344_150--Hb_000227_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.91728 11.0921 11.8941 17.0209 2.77108 7.06162
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.18755 6.93526 7.53764 12.5202 6.99218

CAGE analysis