Hb_018790_080

Information

Type -
Description -
Location Contig18790: 105297-107145
Sequence    

Annotation

kegg
ID pop:POPTR_0011s06335g
description hypothetical protein
nr
ID XP_006377482.1
description hypothetical protein POPTR_0011s06335g [Populus trichocarpa]
swissprot
ID P0DH62
description Inactive protein kinase SELMODRAFT_444075 OS=Selaginella moellendorffii GN=SELMODRAFT_444075 PE=2 SV=1
trembl
ID U5FYQ8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s06335g PE=3 SV=1
Gene Ontology
ID GO:0004674
description receptor-like protein kinase rlpk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018790_080 0.0 - - hypothetical protein POPTR_0011s06335g [Populus trichocarpa]
2 Hb_000925_030 0.1455158763 - - ATP-dependent RNA helicase, putative [Ricinus communis]
3 Hb_004108_240 0.1455272545 - - hypothetical protein POPTR_0002s05550g [Populus trichocarpa]
4 Hb_000699_210 0.1529685411 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
5 Hb_006935_010 0.1546490718 - - PREDICTED: inositol transporter 1 isoform X1 [Gossypium raimondii]
6 Hb_005539_020 0.1579628382 - - -
7 Hb_003147_060 0.1589978497 - - syntaxin, plant, putative [Ricinus communis]
8 Hb_124677_040 0.1612506337 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
9 Hb_002639_100 0.1638317336 - - dehydrin [Hevea brasiliensis]
10 Hb_001376_010 0.167619272 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
11 Hb_001511_150 0.1724014401 - - monovalent cation:proton antiporter, putative [Ricinus communis]
12 Hb_002897_050 0.1732818362 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
13 Hb_002600_080 0.1742517896 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_002107_060 0.1745750283 - - PREDICTED: uncharacterized protein LOC105635312 [Jatropha curcas]
15 Hb_000526_030 0.1751204999 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
16 Hb_000186_200 0.1775500122 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
17 Hb_002311_140 0.1784314256 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]
18 Hb_085364_010 0.178830471 - - PREDICTED: nicalin-1-like [Populus euphratica]
19 Hb_006846_020 0.1799071215 - - PREDICTED: uncharacterized protein LOC105648685 [Jatropha curcas]
20 Hb_004774_020 0.1801238807 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]

Gene co-expression network

sample Hb_018790_080 Hb_018790_080 Hb_000925_030 Hb_000925_030 Hb_018790_080--Hb_000925_030 Hb_004108_240 Hb_004108_240 Hb_018790_080--Hb_004108_240 Hb_000699_210 Hb_000699_210 Hb_018790_080--Hb_000699_210 Hb_006935_010 Hb_006935_010 Hb_018790_080--Hb_006935_010 Hb_005539_020 Hb_005539_020 Hb_018790_080--Hb_005539_020 Hb_003147_060 Hb_003147_060 Hb_018790_080--Hb_003147_060 Hb_000925_030--Hb_003147_060 Hb_003925_040 Hb_003925_040 Hb_000925_030--Hb_003925_040 Hb_000925_030--Hb_004108_240 Hb_124677_040 Hb_124677_040 Hb_000925_030--Hb_124677_040 Hb_002107_060 Hb_002107_060 Hb_000925_030--Hb_002107_060 Hb_001638_030 Hb_001638_030 Hb_000925_030--Hb_001638_030 Hb_004108_240--Hb_124677_040 Hb_000045_260 Hb_000045_260 Hb_004108_240--Hb_000045_260 Hb_004108_240--Hb_003925_040 Hb_001376_010 Hb_001376_010 Hb_004108_240--Hb_001376_010 Hb_004108_240--Hb_003147_060 Hb_004774_020 Hb_004774_020 Hb_004108_240--Hb_004774_020 Hb_001488_040 Hb_001488_040 Hb_000699_210--Hb_001488_040 Hb_009486_160 Hb_009486_160 Hb_000699_210--Hb_009486_160 Hb_002387_040 Hb_002387_040 Hb_000699_210--Hb_002387_040 Hb_000638_280 Hb_000638_280 Hb_000699_210--Hb_000638_280 Hb_002897_050 Hb_002897_050 Hb_000699_210--Hb_002897_050 Hb_000796_120 Hb_000796_120 Hb_000699_210--Hb_000796_120 Hb_002639_100 Hb_002639_100 Hb_006935_010--Hb_002639_100 Hb_000038_040 Hb_000038_040 Hb_006935_010--Hb_000038_040 Hb_006846_020 Hb_006846_020 Hb_006935_010--Hb_006846_020 Hb_001049_160 Hb_001049_160 Hb_006935_010--Hb_001049_160 Hb_007382_100 Hb_007382_100 Hb_006935_010--Hb_007382_100 Hb_000526_030 Hb_000526_030 Hb_005539_020--Hb_000526_030 Hb_052764_030 Hb_052764_030 Hb_005539_020--Hb_052764_030 Hb_000023_350 Hb_000023_350 Hb_005539_020--Hb_000023_350 Hb_000802_190 Hb_000802_190 Hb_005539_020--Hb_000802_190 Hb_002631_040 Hb_002631_040 Hb_005539_020--Hb_002631_040 Hb_004319_070 Hb_004319_070 Hb_005539_020--Hb_004319_070 Hb_003147_060--Hb_003925_040 Hb_002869_050 Hb_002869_050 Hb_003147_060--Hb_002869_050 Hb_006452_180 Hb_006452_180 Hb_003147_060--Hb_006452_180 Hb_009545_090 Hb_009545_090 Hb_003147_060--Hb_009545_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.283765 2.70138 1.21605 0.883156 0.408896 0.185178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.798526 0.889954 0.0981417 0.77376 0.437039

CAGE analysis