Hb_006935_010

Information

Type -
Description -
Location Contig6935: 5207-11812
Sequence    

Annotation

kegg
ID tcc:TCM_020108
description Inositol transporter 1 isoform 1
nr
ID XP_012454568.1
description PREDICTED: inositol transporter 1 isoform X1 [Gossypium raimondii]
swissprot
ID Q8VZR6
description Inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=1 SV=1
trembl
ID A0A0D2T888
description Gossypium raimondii chromosome 11, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_011G145900 PE=4 SV=1
Gene Ontology
ID GO:0016021
description inositol transporter 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54503: 5166-11749 , PASA_asmbl_54508: 5279-6938
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006935_010 0.0 - - PREDICTED: inositol transporter 1 isoform X1 [Gossypium raimondii]
2 Hb_002639_100 0.1018764616 - - dehydrin [Hevea brasiliensis]
3 Hb_000038_040 0.1092299119 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
4 Hb_006846_020 0.1437590617 - - PREDICTED: uncharacterized protein LOC105648685 [Jatropha curcas]
5 Hb_001049_160 0.1478926708 - - aldose 1-epimerase, putative [Ricinus communis]
6 Hb_007382_100 0.1537348822 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
7 Hb_018790_080 0.1546490718 - - hypothetical protein POPTR_0011s06335g [Populus trichocarpa]
8 Hb_000120_160 0.1584003744 - - unnamed protein product [Vitis vinifera]
9 Hb_000221_060 0.1587004218 - - -
10 Hb_011716_050 0.1591743269 - - serine acetyltransferase [Hevea brasiliensis]
11 Hb_000107_440 0.159804729 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
12 Hb_008667_060 0.1606237358 - - Magnesium and cobalt efflux protein corC, putative [Ricinus communis]
13 Hb_000809_080 0.1607651238 - - 50S ribosomal protein L25, putative [Ricinus communis]
14 Hb_000345_500 0.1615189968 - - PREDICTED: peroxisomal adenine nucleotide carrier 1 [Jatropha curcas]
15 Hb_001472_130 0.1623911076 - - PREDICTED: uncharacterized protein LOC105645786 [Jatropha curcas]
16 Hb_002477_120 0.1632828213 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
17 Hb_001318_140 0.165354539 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
18 Hb_003752_120 0.1657560826 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
19 Hb_001818_060 0.1662201166 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
20 Hb_103788_010 0.1664469992 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]

Gene co-expression network

sample Hb_006935_010 Hb_006935_010 Hb_002639_100 Hb_002639_100 Hb_006935_010--Hb_002639_100 Hb_000038_040 Hb_000038_040 Hb_006935_010--Hb_000038_040 Hb_006846_020 Hb_006846_020 Hb_006935_010--Hb_006846_020 Hb_001049_160 Hb_001049_160 Hb_006935_010--Hb_001049_160 Hb_007382_100 Hb_007382_100 Hb_006935_010--Hb_007382_100 Hb_018790_080 Hb_018790_080 Hb_006935_010--Hb_018790_080 Hb_002053_130 Hb_002053_130 Hb_002639_100--Hb_002053_130 Hb_012107_010 Hb_012107_010 Hb_002639_100--Hb_012107_010 Hb_002572_050 Hb_002572_050 Hb_002639_100--Hb_002572_050 Hb_002639_100--Hb_000038_040 Hb_003747_210 Hb_003747_210 Hb_002639_100--Hb_003747_210 Hb_000038_040--Hb_006846_020 Hb_000107_440 Hb_000107_440 Hb_000038_040--Hb_000107_440 Hb_007007_080 Hb_007007_080 Hb_000038_040--Hb_007007_080 Hb_000776_050 Hb_000776_050 Hb_000038_040--Hb_000776_050 Hb_000038_040--Hb_007382_100 Hb_002477_120 Hb_002477_120 Hb_006846_020--Hb_002477_120 Hb_006846_020--Hb_007007_080 Hb_006846_020--Hb_000107_440 Hb_004208_140 Hb_004208_140 Hb_006846_020--Hb_004208_140 Hb_003207_100 Hb_003207_100 Hb_006846_020--Hb_003207_100 Hb_001619_160 Hb_001619_160 Hb_001049_160--Hb_001619_160 Hb_002027_170 Hb_002027_170 Hb_001049_160--Hb_002027_170 Hb_001049_160--Hb_007382_100 Hb_002876_250 Hb_002876_250 Hb_001049_160--Hb_002876_250 Hb_001486_200 Hb_001486_200 Hb_001049_160--Hb_001486_200 Hb_001318_140 Hb_001318_140 Hb_001049_160--Hb_001318_140 Hb_007382_100--Hb_001318_140 Hb_000087_100 Hb_000087_100 Hb_007382_100--Hb_000087_100 Hb_001329_080 Hb_001329_080 Hb_007382_100--Hb_001329_080 Hb_007382_100--Hb_001619_160 Hb_001898_130 Hb_001898_130 Hb_007382_100--Hb_001898_130 Hb_003430_070 Hb_003430_070 Hb_007382_100--Hb_003430_070 Hb_000925_030 Hb_000925_030 Hb_018790_080--Hb_000925_030 Hb_004108_240 Hb_004108_240 Hb_018790_080--Hb_004108_240 Hb_000699_210 Hb_000699_210 Hb_018790_080--Hb_000699_210 Hb_005539_020 Hb_005539_020 Hb_018790_080--Hb_005539_020 Hb_003147_060 Hb_003147_060 Hb_018790_080--Hb_003147_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.83824 140.661 36.0073 56.9773 8.57625 5.98846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9404 29.2405 7.50635 39.7236 19.8677

CAGE analysis