Hb_001049_160

Information

Type -
Description -
Location Contig1049: 241421-244144
Sequence    

Annotation

kegg
ID rcu:RCOM_1690740
description aldose 1-epimerase, putative
nr
ID XP_002509914.1
description aldose 1-epimerase, putative [Ricinus communis]
swissprot
ID Q40784
description Putative glucose-6-phosphate 1-epimerase OS=Cenchrus ciliaris PE=2 SV=1
trembl
ID B9RCN0
description Aldose 1-epimerase, putative OS=Ricinus communis GN=RCOM_1690740 PE=4 SV=1
Gene Ontology
ID GO:0016853
description glucose-6-phosphate 1-epimerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01678: 241436-244116
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001049_160 0.0 - - aldose 1-epimerase, putative [Ricinus communis]
2 Hb_001619_160 0.1248988724 transcription factor TF Family: ERF DREB1p [Hevea brasiliensis]
3 Hb_002027_170 0.128067659 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
4 Hb_007382_100 0.1298877143 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
5 Hb_002876_250 0.1308759076 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
6 Hb_001486_200 0.1349033283 - - PREDICTED: uncharacterized protein LOC105632606 [Jatropha curcas]
7 Hb_001318_140 0.1362751408 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
8 Hb_000207_290 0.1407748081 - - hypothetical protein JCGZ_03920 [Jatropha curcas]
9 Hb_002571_070 0.1417532956 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
10 Hb_006052_060 0.1469513694 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
11 Hb_006935_010 0.1478926708 - - PREDICTED: inositol transporter 1 isoform X1 [Gossypium raimondii]
12 Hb_001242_190 0.1500575492 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
13 Hb_000056_280 0.1522929358 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
14 Hb_000805_190 0.1526834331 transcription factor TF Family: GRAS PREDICTED: uncharacterized protein LOC103323607 [Prunus mume]
15 Hb_000465_260 0.1528779674 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]
16 Hb_000120_160 0.1630348638 - - unnamed protein product [Vitis vinifera]
17 Hb_114684_010 0.1664451222 - - PREDICTED: seed maturation protein PM36 [Jatropha curcas]
18 Hb_001959_120 0.1669063888 - - PREDICTED: uncharacterized protein LOC105638487 [Jatropha curcas]
19 Hb_000116_210 0.1679806043 - - PREDICTED: uncharacterized protein LOC105628567 [Jatropha curcas]
20 Hb_000056_350 0.1681640609 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]

Gene co-expression network

sample Hb_001049_160 Hb_001049_160 Hb_001619_160 Hb_001619_160 Hb_001049_160--Hb_001619_160 Hb_002027_170 Hb_002027_170 Hb_001049_160--Hb_002027_170 Hb_007382_100 Hb_007382_100 Hb_001049_160--Hb_007382_100 Hb_002876_250 Hb_002876_250 Hb_001049_160--Hb_002876_250 Hb_001486_200 Hb_001486_200 Hb_001049_160--Hb_001486_200 Hb_001318_140 Hb_001318_140 Hb_001049_160--Hb_001318_140 Hb_006052_060 Hb_006052_060 Hb_001619_160--Hb_006052_060 Hb_001242_190 Hb_001242_190 Hb_001619_160--Hb_001242_190 Hb_001619_160--Hb_001318_140 Hb_065525_010 Hb_065525_010 Hb_001619_160--Hb_065525_010 Hb_001619_160--Hb_007382_100 Hb_005054_170 Hb_005054_170 Hb_002027_170--Hb_005054_170 Hb_000056_280 Hb_000056_280 Hb_002027_170--Hb_000056_280 Hb_002027_170--Hb_001318_140 Hb_002027_170--Hb_065525_010 Hb_000836_600 Hb_000836_600 Hb_002027_170--Hb_000836_600 Hb_007382_100--Hb_001318_140 Hb_000087_100 Hb_000087_100 Hb_007382_100--Hb_000087_100 Hb_001329_080 Hb_001329_080 Hb_007382_100--Hb_001329_080 Hb_001898_130 Hb_001898_130 Hb_007382_100--Hb_001898_130 Hb_003430_070 Hb_003430_070 Hb_007382_100--Hb_003430_070 Hb_000116_210 Hb_000116_210 Hb_002876_250--Hb_000116_210 Hb_000120_160 Hb_000120_160 Hb_002876_250--Hb_000120_160 Hb_000207_290 Hb_000207_290 Hb_002876_250--Hb_000207_290 Hb_000805_230 Hb_000805_230 Hb_002876_250--Hb_000805_230 Hb_002876_250--Hb_000836_600 Hb_000805_190 Hb_000805_190 Hb_002876_250--Hb_000805_190 Hb_000059_300 Hb_000059_300 Hb_001486_200--Hb_000059_300 Hb_000110_300 Hb_000110_300 Hb_001486_200--Hb_000110_300 Hb_001486_200--Hb_002876_250 Hb_014720_050 Hb_014720_050 Hb_001486_200--Hb_014720_050 Hb_128589_010 Hb_128589_010 Hb_001486_200--Hb_128589_010 Hb_001318_140--Hb_000087_100 Hb_001318_140--Hb_006052_060 Hb_001318_140--Hb_065525_010 Hb_149484_010 Hb_149484_010 Hb_001318_140--Hb_149484_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.19449 50.5379 11.2169 27.6665 0.515984 2.29267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.09588 6.04492 5.08943 19.0017 13.9968

CAGE analysis