Hb_014720_050

Information

Type -
Description -
Location Contig14720: 90860-95276
Sequence    

Annotation

kegg
ID rcu:RCOM_1510520
description hypothetical protein
nr
ID XP_012080058.1
description PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
swissprot
ID Q562D5
description Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1
trembl
ID A0A067KGY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11470 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014720_050 0.0 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
2 Hb_000735_140 0.1323866218 - - 3-glucanase family protein [Populus trichocarpa]
3 Hb_007382_100 0.1334460009 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
4 Hb_001318_140 0.1366653126 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
5 Hb_001226_170 0.1370077137 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
6 Hb_000056_080 0.1389621461 - - PREDICTED: protein kinase 2B, chloroplastic [Jatropha curcas]
7 Hb_001486_200 0.1390050785 - - PREDICTED: uncharacterized protein LOC105632606 [Jatropha curcas]
8 Hb_004724_330 0.1449577153 - - Capsanthin/capsorubin synthase, chloroplast precursor, putative [Ricinus communis]
9 Hb_001474_050 0.1506064625 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
10 Hb_001329_080 0.1564323019 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
11 Hb_001898_130 0.1583603396 - - ATP binding protein, putative [Ricinus communis]
12 Hb_002875_070 0.1594215954 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
13 Hb_002284_080 0.15979618 - - protein with unknown function [Ricinus communis]
14 Hb_005054_020 0.1600478866 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
15 Hb_000913_080 0.1618335397 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 11 [Jatropha curcas]
16 Hb_003849_190 0.1638887652 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]
17 Hb_002027_170 0.1655857593 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
18 Hb_003670_030 0.1662205659 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
19 Hb_002849_070 0.1679393807 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
20 Hb_002000_090 0.1690946062 - - 60S ribosomal protein L3B [Hevea brasiliensis]

Gene co-expression network

sample Hb_014720_050 Hb_014720_050 Hb_000735_140 Hb_000735_140 Hb_014720_050--Hb_000735_140 Hb_007382_100 Hb_007382_100 Hb_014720_050--Hb_007382_100 Hb_001318_140 Hb_001318_140 Hb_014720_050--Hb_001318_140 Hb_001226_170 Hb_001226_170 Hb_014720_050--Hb_001226_170 Hb_000056_080 Hb_000056_080 Hb_014720_050--Hb_000056_080 Hb_001486_200 Hb_001486_200 Hb_014720_050--Hb_001486_200 Hb_002849_070 Hb_002849_070 Hb_000735_140--Hb_002849_070 Hb_003849_190 Hb_003849_190 Hb_000735_140--Hb_003849_190 Hb_143766_030 Hb_143766_030 Hb_000735_140--Hb_143766_030 Hb_000111_370 Hb_000111_370 Hb_000735_140--Hb_000111_370 Hb_000735_080 Hb_000735_080 Hb_000735_140--Hb_000735_080 Hb_000735_140--Hb_000056_080 Hb_007382_100--Hb_001318_140 Hb_000087_100 Hb_000087_100 Hb_007382_100--Hb_000087_100 Hb_001329_080 Hb_001329_080 Hb_007382_100--Hb_001329_080 Hb_001619_160 Hb_001619_160 Hb_007382_100--Hb_001619_160 Hb_001898_130 Hb_001898_130 Hb_007382_100--Hb_001898_130 Hb_003430_070 Hb_003430_070 Hb_007382_100--Hb_003430_070 Hb_001318_140--Hb_000087_100 Hb_006052_060 Hb_006052_060 Hb_001318_140--Hb_006052_060 Hb_001318_140--Hb_001619_160 Hb_065525_010 Hb_065525_010 Hb_001318_140--Hb_065525_010 Hb_149484_010 Hb_149484_010 Hb_001318_140--Hb_149484_010 Hb_001226_170--Hb_000087_100 Hb_003633_150 Hb_003633_150 Hb_001226_170--Hb_003633_150 Hb_009476_110 Hb_009476_110 Hb_001226_170--Hb_009476_110 Hb_001102_200 Hb_001102_200 Hb_001226_170--Hb_001102_200 Hb_001226_170--Hb_007382_100 Hb_182970_010 Hb_182970_010 Hb_001226_170--Hb_182970_010 Hb_000056_080--Hb_002849_070 Hb_000200_170 Hb_000200_170 Hb_000056_080--Hb_000200_170 Hb_000203_270 Hb_000203_270 Hb_000056_080--Hb_000203_270 Hb_003670_030 Hb_003670_030 Hb_000056_080--Hb_003670_030 Hb_000056_080--Hb_003849_190 Hb_000059_300 Hb_000059_300 Hb_001486_200--Hb_000059_300 Hb_000110_300 Hb_000110_300 Hb_001486_200--Hb_000110_300 Hb_001049_160 Hb_001049_160 Hb_001486_200--Hb_001049_160 Hb_002876_250 Hb_002876_250 Hb_001486_200--Hb_002876_250 Hb_128589_010 Hb_128589_010 Hb_001486_200--Hb_128589_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.15383 4.52961 2.18289 3.88382 0.248051 0.133003
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.161863 0.705479 1.12712 1.23099 1.17358

CAGE analysis