Hb_000914_130

Information

Type -
Description -
Location Contig914: 122022-128339
Sequence    

Annotation

kegg
ID rcu:RCOM_1577390
description copper-transporting atpase p-type, putative (EC:3.6.3.4)
nr
ID XP_002513473.1
description copper-transporting atpase p-type, putative [Ricinus communis]
swissprot
ID Q9SH30
description Probable copper-transporting ATPase HMA5 OS=Arabidopsis thaliana GN=HMA5 PE=1 SV=2
trembl
ID B9RIA4
description Copper-transporting atpase p-type, putative OS=Ricinus communis GN=RCOM_1577390 PE=3 SV=1
Gene Ontology
ID GO:0016021
description probable copper-transporting atpase hma5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62192: 122226-122652 , PASA_asmbl_62193: 122784-124200 , PASA_asmbl_62194: 124354-126949 , PASA_asmbl_62195: 126972-128296
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000914_130 0.0 - - copper-transporting atpase p-type, putative [Ricinus communis]
2 Hb_000130_080 0.1196528164 - - unnamed protein product [Vitis vinifera]
3 Hb_004007_120 0.1268918027 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type isoform X1 [Populus euphratica]
4 Hb_008215_010 0.137561089 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005649_010 0.1541649234 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
6 Hb_000227_370 0.1554895957 - - sugar transporter, putative [Ricinus communis]
7 Hb_000120_070 0.158890152 - - PREDICTED: uncharacterized protein LOC105630351 [Jatropha curcas]
8 Hb_000836_390 0.1630730294 - - PREDICTED: neurofilament light polypeptide-like [Gossypium raimondii]
9 Hb_000046_590 0.1650459932 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
10 Hb_006970_150 0.1677119158 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
11 Hb_029622_020 0.171489911 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000252_080 0.1756481609 - - PREDICTED: uncharacterized protein LOC105644644 [Jatropha curcas]
13 Hb_005628_050 0.1766906159 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
14 Hb_043987_010 0.1791999262 - - glutathione s-transferase, putative [Ricinus communis]
15 Hb_000977_090 0.1796987388 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
16 Hb_001318_110 0.1802573192 - - PREDICTED: uncharacterized protein LOC105642677 [Jatropha curcas]
17 Hb_162286_030 0.1808374697 - - PREDICTED: uncharacterized protein LOC105650163 [Jatropha curcas]
18 Hb_000051_030 0.1818046183 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
19 Hb_000598_020 0.1825082639 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
20 Hb_007765_140 0.1825396054 - - PREDICTED: protein NRT1/ PTR FAMILY 8.1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000914_130 Hb_000914_130 Hb_000130_080 Hb_000130_080 Hb_000914_130--Hb_000130_080 Hb_004007_120 Hb_004007_120 Hb_000914_130--Hb_004007_120 Hb_008215_010 Hb_008215_010 Hb_000914_130--Hb_008215_010 Hb_005649_010 Hb_005649_010 Hb_000914_130--Hb_005649_010 Hb_000227_370 Hb_000227_370 Hb_000914_130--Hb_000227_370 Hb_000120_070 Hb_000120_070 Hb_000914_130--Hb_000120_070 Hb_000130_080--Hb_004007_120 Hb_006925_060 Hb_006925_060 Hb_000130_080--Hb_006925_060 Hb_005186_090 Hb_005186_090 Hb_000130_080--Hb_005186_090 Hb_006970_150 Hb_006970_150 Hb_000130_080--Hb_006970_150 Hb_002343_020 Hb_002343_020 Hb_000130_080--Hb_002343_020 Hb_000977_090 Hb_000977_090 Hb_004007_120--Hb_000977_090 Hb_004007_120--Hb_000120_070 Hb_004218_160 Hb_004218_160 Hb_004007_120--Hb_004218_160 Hb_003556_070 Hb_003556_070 Hb_004007_120--Hb_003556_070 Hb_004007_120--Hb_005649_010 Hb_000836_390 Hb_000836_390 Hb_008215_010--Hb_000836_390 Hb_007765_140 Hb_007765_140 Hb_008215_010--Hb_007765_140 Hb_008215_010--Hb_000120_070 Hb_000075_110 Hb_000075_110 Hb_008215_010--Hb_000075_110 Hb_000046_590 Hb_000046_590 Hb_008215_010--Hb_000046_590 Hb_165404_010 Hb_165404_010 Hb_008215_010--Hb_165404_010 Hb_005649_010--Hb_002343_020 Hb_003964_010 Hb_003964_010 Hb_005649_010--Hb_003964_010 Hb_064985_010 Hb_064985_010 Hb_005649_010--Hb_064985_010 Hb_001377_130 Hb_001377_130 Hb_005649_010--Hb_001377_130 Hb_013938_010 Hb_013938_010 Hb_005649_010--Hb_013938_010 Hb_001318_110 Hb_001318_110 Hb_005649_010--Hb_001318_110 Hb_000009_130 Hb_000009_130 Hb_000227_370--Hb_000009_130 Hb_002025_350 Hb_002025_350 Hb_000227_370--Hb_002025_350 Hb_162286_030 Hb_162286_030 Hb_000227_370--Hb_162286_030 Hb_002110_060 Hb_002110_060 Hb_000227_370--Hb_002110_060 Hb_004657_040 Hb_004657_040 Hb_000227_370--Hb_004657_040 Hb_008695_130 Hb_008695_130 Hb_000227_370--Hb_008695_130 Hb_000120_070--Hb_000836_390 Hb_000120_070--Hb_007765_140 Hb_000120_070--Hb_000075_110 Hb_000120_070--Hb_003556_070 Hb_000120_070--Hb_006970_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0240588 7.27248 5.02869 2.44636 0.0355834 0.0241973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.182849 0.709873 0.294347 7.20754 0.800429

CAGE analysis