Hb_004459_110

Information

Type -
Description -
Location Contig4459: 170324-171530
Sequence    

Annotation

kegg
ID pop:POPTR_0004s06050g
description POPTRDRAFT_855146; hypothetical protein
nr
ID XP_011010908.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
swissprot
ID Q8RWZ5
description G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Arabidopsis thaliana GN=SD25 PE=1 SV=1
trembl
ID B9H2E2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s06050g PE=4 SV=2
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase sd2-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43005: 171176-171358
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004459_110 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
2 Hb_000996_200 0.1159385087 - - PREDICTED: (+)-neomenthol dehydrogenase-like [Populus euphratica]
3 Hb_002085_070 0.1181373216 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
4 Hb_000002_100 0.122739229 - - phosphate transporter [Manihot esculenta]
5 Hb_006634_080 0.1274678308 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
6 Hb_157980_010 0.128162538 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
7 Hb_006970_150 0.1300342803 - - PREDICTED: uncharacterized protein LOC105650471 [Jatropha curcas]
8 Hb_073119_010 0.1339295395 - - hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
9 Hb_174380_010 0.1388576781 - - kinase, putative [Ricinus communis]
10 Hb_000252_080 0.1401154035 - - PREDICTED: uncharacterized protein LOC105644644 [Jatropha curcas]
11 Hb_008948_080 0.1403599759 - - PREDICTED: TBC1 domain family member 13-like isoform X1 [Jatropha curcas]
12 Hb_000098_250 0.1447138659 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
13 Hb_012018_020 0.1448484403 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Eucalyptus grandis]
14 Hb_008667_030 0.1468255472 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
15 Hb_000752_020 0.1468772051 - - PREDICTED: uncharacterized protein LOC105641803 isoform X1 [Jatropha curcas]
16 Hb_002284_020 0.1472877332 - - PREDICTED: probable inorganic phosphate transporter 1-9 [Jatropha curcas]
17 Hb_000075_110 0.1473533449 - - aldo-keto reductase, putative [Ricinus communis]
18 Hb_005357_270 0.1475937338 - - Glucose-6-phosphate/phosphate translocator 2, chloroplast precursor, putative [Ricinus communis]
19 Hb_000521_290 0.1495103649 - - hypothetical protein POPTR_0001s23530g [Populus trichocarpa]
20 Hb_003914_050 0.1509132134 - - PREDICTED: uncharacterized protein LOC104445137 [Eucalyptus grandis]

Gene co-expression network

sample Hb_004459_110 Hb_004459_110 Hb_000996_200 Hb_000996_200 Hb_004459_110--Hb_000996_200 Hb_002085_070 Hb_002085_070 Hb_004459_110--Hb_002085_070 Hb_000002_100 Hb_000002_100 Hb_004459_110--Hb_000002_100 Hb_006634_080 Hb_006634_080 Hb_004459_110--Hb_006634_080 Hb_157980_010 Hb_157980_010 Hb_004459_110--Hb_157980_010 Hb_006970_150 Hb_006970_150 Hb_004459_110--Hb_006970_150 Hb_012545_080 Hb_012545_080 Hb_000996_200--Hb_012545_080 Hb_005357_270 Hb_005357_270 Hb_000996_200--Hb_005357_270 Hb_000996_200--Hb_006634_080 Hb_000996_200--Hb_157980_010 Hb_004785_120 Hb_004785_120 Hb_000996_200--Hb_004785_120 Hb_001514_100 Hb_001514_100 Hb_002085_070--Hb_001514_100 Hb_000521_290 Hb_000521_290 Hb_002085_070--Hb_000521_290 Hb_002085_070--Hb_157980_010 Hb_002085_070--Hb_000002_100 Hb_012018_020 Hb_012018_020 Hb_002085_070--Hb_012018_020 Hb_000265_020 Hb_000265_020 Hb_002085_070--Hb_000265_020 Hb_000002_100--Hb_000521_290 Hb_000002_100--Hb_012018_020 Hb_000002_100--Hb_001514_100 Hb_000177_130 Hb_000177_130 Hb_000002_100--Hb_000177_130 Hb_010921_060 Hb_010921_060 Hb_000002_100--Hb_010921_060 Hb_006634_080--Hb_157980_010 Hb_009083_010 Hb_009083_010 Hb_006634_080--Hb_009083_010 Hb_174380_010 Hb_174380_010 Hb_006634_080--Hb_174380_010 Hb_006634_080--Hb_005357_270 Hb_000110_330 Hb_000110_330 Hb_006634_080--Hb_000110_330 Hb_111985_060 Hb_111985_060 Hb_157980_010--Hb_111985_060 Hb_157980_010--Hb_001514_100 Hb_033045_010 Hb_033045_010 Hb_006970_150--Hb_033045_010 Hb_000075_110 Hb_000075_110 Hb_006970_150--Hb_000075_110 Hb_002518_270 Hb_002518_270 Hb_006970_150--Hb_002518_270 Hb_000120_070 Hb_000120_070 Hb_006970_150--Hb_000120_070 Hb_006970_150--Hb_000265_020 Hb_008948_080 Hb_008948_080 Hb_006970_150--Hb_008948_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.63996 0.803953 0.36046 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0329985 0.0612967 0.806775 0.204551

CAGE analysis