Hb_000181_080

Information

Type transcription factor
Description TF Family: ERF
Location Contig181: 57606-58307
Sequence    

Annotation

kegg
ID pop:POPTR_0001s40770g
description Ethylene responsive element binding factor 4 family protein
nr
ID AGL34964.1
description ethylene-responsive transcription factor 5 [Hevea brasiliensis]
swissprot
ID O80340
description Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1
trembl
ID R4N3C9
description Ethylene-responsive transcription factor 5 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0003677
description ethylene-responsive transcription factor 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17497: 57579-58566
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000181_080 0.0 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
2 Hb_000307_110 0.113220786 - - hypothetical protein JCGZ_08160 [Jatropha curcas]
3 Hb_004531_010 0.116745464 - - PREDICTED: ankyrin repeat-containing protein At2g01680-like [Jatropha curcas]
4 Hb_000103_400 0.1167862878 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
5 Hb_000245_270 0.1197993155 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
6 Hb_000210_150 0.1246054393 - - PREDICTED: protein YLS9-like [Jatropha curcas]
7 Hb_007429_020 0.1287701825 - - kinase, putative [Ricinus communis]
8 Hb_000003_420 0.1295522982 - - o-methyltransferase, putative [Ricinus communis]
9 Hb_000172_300 0.130904678 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
10 Hb_002284_020 0.1325162629 - - PREDICTED: probable inorganic phosphate transporter 1-9 [Jatropha curcas]
11 Hb_012702_010 0.1327884514 - - PREDICTED: TMV resistance protein N-like isoform X4 [Vitis vinifera]
12 Hb_002272_140 0.1345378955 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
13 Hb_000359_080 0.13526411 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
14 Hb_001504_270 0.1379082149 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
15 Hb_116349_090 0.1380331176 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
16 Hb_158123_010 0.1382302654 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
17 Hb_052113_020 0.1413446563 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
18 Hb_002042_190 0.142621834 - - PREDICTED: E3 ubiquitin-protein ligase ATL6-like [Jatropha curcas]
19 Hb_029238_020 0.1428421507 - - PREDICTED: expansin-like A1 [Jatropha curcas]
20 Hb_000434_050 0.1448422936 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000181_080 Hb_000181_080 Hb_000307_110 Hb_000307_110 Hb_000181_080--Hb_000307_110 Hb_004531_010 Hb_004531_010 Hb_000181_080--Hb_004531_010 Hb_000103_400 Hb_000103_400 Hb_000181_080--Hb_000103_400 Hb_000245_270 Hb_000245_270 Hb_000181_080--Hb_000245_270 Hb_000210_150 Hb_000210_150 Hb_000181_080--Hb_000210_150 Hb_007429_020 Hb_007429_020 Hb_000181_080--Hb_007429_020 Hb_002284_020 Hb_002284_020 Hb_000307_110--Hb_002284_020 Hb_000297_100 Hb_000297_100 Hb_000307_110--Hb_000297_100 Hb_003086_050 Hb_003086_050 Hb_000307_110--Hb_003086_050 Hb_041290_030 Hb_041290_030 Hb_000307_110--Hb_041290_030 Hb_000307_110--Hb_000103_400 Hb_000347_370 Hb_000347_370 Hb_004531_010--Hb_000347_370 Hb_004267_070 Hb_004267_070 Hb_004531_010--Hb_004267_070 Hb_007305_040 Hb_007305_040 Hb_004531_010--Hb_007305_040 Hb_007383_050 Hb_007383_050 Hb_004531_010--Hb_007383_050 Hb_001411_150 Hb_001411_150 Hb_004531_010--Hb_001411_150 Hb_004531_010--Hb_000210_150 Hb_002272_140 Hb_002272_140 Hb_000103_400--Hb_002272_140 Hb_000473_080 Hb_000473_080 Hb_000103_400--Hb_000473_080 Hb_006414_020 Hb_006414_020 Hb_000103_400--Hb_006414_020 Hb_000359_080 Hb_000359_080 Hb_000103_400--Hb_000359_080 Hb_000803_060 Hb_000803_060 Hb_000103_400--Hb_000803_060 Hb_000506_130 Hb_000506_130 Hb_000245_270--Hb_000506_130 Hb_000805_150 Hb_000805_150 Hb_000245_270--Hb_000805_150 Hb_029238_020 Hb_029238_020 Hb_000245_270--Hb_029238_020 Hb_116349_090 Hb_116349_090 Hb_000245_270--Hb_116349_090 Hb_004143_050 Hb_004143_050 Hb_000245_270--Hb_004143_050 Hb_078901_010 Hb_078901_010 Hb_000245_270--Hb_078901_010 Hb_025477_020 Hb_025477_020 Hb_000210_150--Hb_025477_020 Hb_000210_150--Hb_004267_070 Hb_035391_010 Hb_035391_010 Hb_000210_150--Hb_035391_010 Hb_158123_010 Hb_158123_010 Hb_000210_150--Hb_158123_010 Hb_027214_060 Hb_027214_060 Hb_000210_150--Hb_027214_060 Hb_000316_150 Hb_000316_150 Hb_000210_150--Hb_000316_150 Hb_000003_420 Hb_000003_420 Hb_007429_020--Hb_000003_420 Hb_008380_010 Hb_008380_010 Hb_007429_020--Hb_008380_010 Hb_007429_020--Hb_000359_080 Hb_029866_050 Hb_029866_050 Hb_007429_020--Hb_029866_050 Hb_007429_020--Hb_004531_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.4547 578.484 61.2133 111.504 1.97402 1.40828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.8167 7.47542 11.3077 47.3701 31.9612

CAGE analysis