Hb_008380_010

Information

Type -
Description -
Location Contig8380: 11226-11909
Sequence    

Annotation

kegg
ID cmo:103486257
description PRA1 family protein B4
nr
ID XP_010517128.1
description PREDICTED: PRA1 family protein B4-like [Camelina sativa]
swissprot
ID O80915
description PRA1 family protein B4 OS=Arabidopsis thaliana GN=PRA1B4 PE=1 SV=1
trembl
ID V4MBL2
description Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10017219mg PE=4 SV=1
Gene Ontology
ID GO:0005783
description pra1 family protein b4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008380_010 0.0 - - PREDICTED: PRA1 family protein B4-like [Camelina sativa]
2 Hb_098160_010 0.1315805169 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
3 Hb_006414_020 0.1358921533 transcription factor TF Family: MYB -
4 Hb_001898_010 0.1388897887 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
5 Hb_000103_400 0.1399377381 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
6 Hb_033149_020 0.1403903556 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
7 Hb_181824_010 0.1461487028 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
8 Hb_007429_020 0.1465112428 - - kinase, putative [Ricinus communis]
9 Hb_000363_110 0.1511551691 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
10 Hb_003097_090 0.152026752 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011360_090 0.1527392099 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
12 Hb_000451_040 0.1527927739 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000473_080 0.1538456137 - - PREDICTED: lipase-like PAD4 [Populus euphratica]
14 Hb_012787_040 0.1547190314 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
15 Hb_000003_420 0.155884111 - - o-methyltransferase, putative [Ricinus communis]
16 Hb_008021_010 0.1560153291 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
17 Hb_000776_050 0.156103396 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
18 Hb_017857_010 0.1581717524 - - -
19 Hb_002234_200 0.1590675256 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
20 Hb_007120_010 0.159556969 - - PREDICTED: uncharacterized protein LOC105634737 [Jatropha curcas]

Gene co-expression network

sample Hb_008380_010 Hb_008380_010 Hb_098160_010 Hb_098160_010 Hb_008380_010--Hb_098160_010 Hb_006414_020 Hb_006414_020 Hb_008380_010--Hb_006414_020 Hb_001898_010 Hb_001898_010 Hb_008380_010--Hb_001898_010 Hb_000103_400 Hb_000103_400 Hb_008380_010--Hb_000103_400 Hb_033149_020 Hb_033149_020 Hb_008380_010--Hb_033149_020 Hb_181824_010 Hb_181824_010 Hb_008380_010--Hb_181824_010 Hb_001405_060 Hb_001405_060 Hb_098160_010--Hb_001405_060 Hb_007574_050 Hb_007574_050 Hb_098160_010--Hb_007574_050 Hb_002234_200 Hb_002234_200 Hb_098160_010--Hb_002234_200 Hb_000363_110 Hb_000363_110 Hb_098160_010--Hb_000363_110 Hb_005282_010 Hb_005282_010 Hb_098160_010--Hb_005282_010 Hb_098160_010--Hb_001898_010 Hb_000803_060 Hb_000803_060 Hb_006414_020--Hb_000803_060 Hb_001489_120 Hb_001489_120 Hb_006414_020--Hb_001489_120 Hb_012787_040 Hb_012787_040 Hb_006414_020--Hb_012787_040 Hb_011360_090 Hb_011360_090 Hb_006414_020--Hb_011360_090 Hb_006414_020--Hb_000103_400 Hb_001258_150 Hb_001258_150 Hb_006414_020--Hb_001258_150 Hb_005375_070 Hb_005375_070 Hb_001898_010--Hb_005375_070 Hb_000402_030 Hb_000402_030 Hb_001898_010--Hb_000402_030 Hb_004712_160 Hb_004712_160 Hb_001898_010--Hb_004712_160 Hb_001898_010--Hb_007574_050 Hb_009476_110 Hb_009476_110 Hb_001898_010--Hb_009476_110 Hb_002272_140 Hb_002272_140 Hb_000103_400--Hb_002272_140 Hb_000181_080 Hb_000181_080 Hb_000103_400--Hb_000181_080 Hb_000473_080 Hb_000473_080 Hb_000103_400--Hb_000473_080 Hb_000359_080 Hb_000359_080 Hb_000103_400--Hb_000359_080 Hb_000103_400--Hb_000803_060 Hb_000610_060 Hb_000610_060 Hb_033149_020--Hb_000610_060 Hb_033149_020--Hb_181824_010 Hb_000451_040 Hb_000451_040 Hb_033149_020--Hb_000451_040 Hb_000045_140 Hb_000045_140 Hb_033149_020--Hb_000045_140 Hb_056012_010 Hb_056012_010 Hb_033149_020--Hb_056012_010 Hb_005568_060 Hb_005568_060 Hb_181824_010--Hb_005568_060 Hb_001846_040 Hb_001846_040 Hb_181824_010--Hb_001846_040 Hb_181824_010--Hb_000045_140 Hb_016404_010 Hb_016404_010 Hb_181824_010--Hb_016404_010 Hb_138628_010 Hb_138628_010 Hb_181824_010--Hb_138628_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.95684 102.817 32.6332 29.62 3.26972 3.86774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.417816 0.591208 7.71535 12.5214 6.8657

CAGE analysis