Hb_016404_010

Information

Type -
Description -
Location Contig16404: 1920-3387
Sequence    

Annotation

kegg
ID cic:CICLE_v10010865mg
description hypothetical protein
nr
ID KDP43125.1
description hypothetical protein JCGZ_26658 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067LF36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26658 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15090: 2071-3093
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_016404_010 0.0 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
2 Hb_136027_010 0.1047189257 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_26658 [Jatropha curcas]
3 Hb_000506_140 0.109729407 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
4 Hb_005568_060 0.1118951104 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]
5 Hb_000796_200 0.1187904055 - - PREDICTED: probable glycerol-3-phosphate acyltransferase 3 [Jatropha curcas]
6 Hb_002311_490 0.1196883883 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
7 Hb_000465_330 0.119716962 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
8 Hb_001846_040 0.1206999738 - - cytochrome P450, putative [Ricinus communis]
9 Hb_181824_010 0.1241506087 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
10 Hb_035391_010 0.1245915698 - - TMV resistance protein N, putative [Ricinus communis]
11 Hb_009247_020 0.1259613169 - - hypothetical protein JCGZ_04985 [Jatropha curcas]
12 Hb_102100_010 0.1321657643 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
13 Hb_158123_010 0.1363576209 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
14 Hb_011287_020 0.1371649399 - - ATP binding protein, putative [Ricinus communis]
15 Hb_012423_020 0.1402253222 - - hypothetical protein JCGZ_20730 [Jatropha curcas]
16 Hb_185080_010 0.1404587063 - - -
17 Hb_000563_460 0.1450569415 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]
18 Hb_000230_210 0.1486029899 - - PREDICTED: uncharacterized protein LOC105631864 [Jatropha curcas]
19 Hb_000819_040 0.1486474023 - - ATP binding protein, putative [Ricinus communis]
20 Hb_006483_050 0.1515355137 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]

Gene co-expression network

sample Hb_016404_010 Hb_016404_010 Hb_136027_010 Hb_136027_010 Hb_016404_010--Hb_136027_010 Hb_000506_140 Hb_000506_140 Hb_016404_010--Hb_000506_140 Hb_005568_060 Hb_005568_060 Hb_016404_010--Hb_005568_060 Hb_000796_200 Hb_000796_200 Hb_016404_010--Hb_000796_200 Hb_002311_490 Hb_002311_490 Hb_016404_010--Hb_002311_490 Hb_000465_330 Hb_000465_330 Hb_016404_010--Hb_000465_330 Hb_003582_020 Hb_003582_020 Hb_136027_010--Hb_003582_020 Hb_035391_010 Hb_035391_010 Hb_136027_010--Hb_035391_010 Hb_009247_020 Hb_009247_020 Hb_136027_010--Hb_009247_020 Hb_001846_040 Hb_001846_040 Hb_136027_010--Hb_001846_040 Hb_136027_010--Hb_000796_200 Hb_000506_140--Hb_000796_200 Hb_000506_140--Hb_002311_490 Hb_000506_140--Hb_000465_330 Hb_000506_130 Hb_000506_130 Hb_000506_140--Hb_000506_130 Hb_116349_090 Hb_116349_090 Hb_000506_140--Hb_116349_090 Hb_181824_010 Hb_181824_010 Hb_005568_060--Hb_181824_010 Hb_005568_060--Hb_001846_040 Hb_004787_100 Hb_004787_100 Hb_005568_060--Hb_004787_100 Hb_005568_060--Hb_009247_020 Hb_006483_050 Hb_006483_050 Hb_005568_060--Hb_006483_050 Hb_012423_020 Hb_012423_020 Hb_000796_200--Hb_012423_020 Hb_011287_020 Hb_011287_020 Hb_000796_200--Hb_011287_020 Hb_000796_200--Hb_116349_090 Hb_000563_460 Hb_000563_460 Hb_002311_490--Hb_000563_460 Hb_158123_010 Hb_158123_010 Hb_002311_490--Hb_158123_010 Hb_174829_040 Hb_174829_040 Hb_002311_490--Hb_174829_040 Hb_002311_490--Hb_000465_330 Hb_002311_490--Hb_035391_010 Hb_000465_330--Hb_158123_010 Hb_000465_330--Hb_000796_200 Hb_121913_010 Hb_121913_010 Hb_000465_330--Hb_121913_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.76401 79.6294 12.8652 13.154 1.35146 2.76662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.198692 0.250074 0.523815 1.80261 0.97132

CAGE analysis