Hb_029238_020

Information

Type -
Description -
Location Contig29238: 19440-21402
Sequence    

Annotation

kegg
ID rcu:RCOM_0235100
description Beta-expansin 1a precursor, putative
nr
ID XP_012069316.1
description PREDICTED: expansin-like A1 [Jatropha curcas]
swissprot
ID Q9LZT4
description Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1
trembl
ID A0A067KZN6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03948 PE=3 SV=1
Gene Ontology
ID GO:0005576
description expansin-like a2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30646: 19452-21382
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029238_020 0.0 - - PREDICTED: expansin-like A1 [Jatropha curcas]
2 Hb_000245_270 0.0981743135 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
3 Hb_116349_090 0.1063056301 - - PREDICTED: probable galacturonosyltransferase-like 9 [Jatropha curcas]
4 Hb_000805_150 0.1148213487 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
5 Hb_001511_270 0.1152323717 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 29 [Jatropha curcas]
6 Hb_002234_200 0.1197012319 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
7 Hb_000506_130 0.12041135 - - DGCR14-related family protein [Populus trichocarpa]
8 Hb_004143_050 0.12148685 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
9 Hb_000252_190 0.1247298033 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
10 Hb_001477_080 0.1248934947 - - hypothetical protein POPTR_0017s04860g [Populus trichocarpa]
11 Hb_007441_150 0.1261223712 - - Ankyrin repeat family protein [Theobroma cacao]
12 Hb_004242_160 0.1265515946 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
13 Hb_000221_280 0.1279727732 - - PREDICTED: protein EXORDIUM-like [Populus euphratica]
14 Hb_013607_010 0.128413533 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
15 Hb_004531_010 0.134928638 - - PREDICTED: ankyrin repeat-containing protein At2g01680-like [Jatropha curcas]
16 Hb_001213_140 0.135808002 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
17 Hb_005282_010 0.1373878569 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
18 Hb_052113_020 0.1374675951 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
19 Hb_000529_050 0.1379436801 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
20 Hb_029866_050 0.139187428 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]

Gene co-expression network

sample Hb_029238_020 Hb_029238_020 Hb_000245_270 Hb_000245_270 Hb_029238_020--Hb_000245_270 Hb_116349_090 Hb_116349_090 Hb_029238_020--Hb_116349_090 Hb_000805_150 Hb_000805_150 Hb_029238_020--Hb_000805_150 Hb_001511_270 Hb_001511_270 Hb_029238_020--Hb_001511_270 Hb_002234_200 Hb_002234_200 Hb_029238_020--Hb_002234_200 Hb_000506_130 Hb_000506_130 Hb_029238_020--Hb_000506_130 Hb_000245_270--Hb_000506_130 Hb_000245_270--Hb_000805_150 Hb_000245_270--Hb_116349_090 Hb_004143_050 Hb_004143_050 Hb_000245_270--Hb_004143_050 Hb_078901_010 Hb_078901_010 Hb_000245_270--Hb_078901_010 Hb_116349_090--Hb_000805_150 Hb_116349_090--Hb_001511_270 Hb_004242_160 Hb_004242_160 Hb_116349_090--Hb_004242_160 Hb_001477_080 Hb_001477_080 Hb_116349_090--Hb_001477_080 Hb_000805_150--Hb_078901_010 Hb_011287_020 Hb_011287_020 Hb_000805_150--Hb_011287_020 Hb_009476_010 Hb_009476_010 Hb_000805_150--Hb_009476_010 Hb_007441_150 Hb_007441_150 Hb_000805_150--Hb_007441_150 Hb_001511_270--Hb_004242_160 Hb_002849_030 Hb_002849_030 Hb_001511_270--Hb_002849_030 Hb_001511_270--Hb_001477_080 Hb_009189_010 Hb_009189_010 Hb_001511_270--Hb_009189_010 Hb_000260_130 Hb_000260_130 Hb_001511_270--Hb_000260_130 Hb_001405_060 Hb_001405_060 Hb_002234_200--Hb_001405_060 Hb_005282_010 Hb_005282_010 Hb_002234_200--Hb_005282_010 Hb_013607_010 Hb_013607_010 Hb_002234_200--Hb_013607_010 Hb_000363_110 Hb_000363_110 Hb_002234_200--Hb_000363_110 Hb_008948_110 Hb_008948_110 Hb_002234_200--Hb_008948_110 Hb_098160_010 Hb_098160_010 Hb_002234_200--Hb_098160_010 Hb_000506_140 Hb_000506_140 Hb_000506_130--Hb_000506_140 Hb_052113_020 Hb_052113_020 Hb_000506_130--Hb_052113_020 Hb_017434_020 Hb_017434_020 Hb_000506_130--Hb_017434_020 Hb_000506_130--Hb_004143_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.19634 394.94 65.5478 146.53 4.38408 2.36682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.83695 2.92879 4.07012 20.7572 26.368

CAGE analysis