Hb_013607_010

Information

Type transcription factor
Description TF Family: bZIP
Location Contig13607: 7146-13712
Sequence    

Annotation

kegg
ID rcu:RCOM_1033270
description Transcription factor TGA7, putative
nr
ID XP_012078125.1
description PREDICTED: transcription factor TGA3 [Jatropha curcas]
swissprot
ID Q93ZE2
description Transcription factor TGA7 OS=Arabidopsis thaliana GN=TGA7 PE=1 SV=1
trembl
ID B9RJD3
description Transcription factor TGA7, putative OS=Ricinus communis GN=RCOM_1033270 PE=4 SV=1
Gene Ontology
ID GO:0003700
description transcription factor tga4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10034: 11884-12190 , PASA_asmbl_10035: 12481-12868
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013607_010 0.0 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
2 Hb_002234_200 0.1064341025 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]
3 Hb_000363_110 0.1075658533 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 21 [Jatropha curcas]
4 Hb_127400_010 0.1118102758 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
5 Hb_001568_120 0.1209963892 - - hypothetical protein JCGZ_05918 [Jatropha curcas]
6 Hb_029238_020 0.128413533 - - PREDICTED: expansin-like A1 [Jatropha curcas]
7 Hb_009510_050 0.1311370437 - - conserved hypothetical protein [Ricinus communis]
8 Hb_019654_010 0.133343743 - - multicopper oxidase, putative [Ricinus communis]
9 Hb_098160_010 0.1345915062 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
10 Hb_001405_060 0.1358126224 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 4-like [Jatropha curcas]
11 Hb_000000_070 0.1365387226 - - allene oxide synthase [Hevea brasiliensis]
12 Hb_032260_100 0.1425539291 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 53 [Jatropha curcas]
13 Hb_007574_050 0.1450878684 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
14 Hb_006698_020 0.1452596163 - - hypothetical protein JCGZ_04585 [Jatropha curcas]
15 Hb_029622_080 0.1456530916 transcription factor TF Family: AP2 hypothetical protein JCGZ_26299 [Jatropha curcas]
16 Hb_000397_090 0.1479833429 - - PREDICTED: uncharacterized protein LOC105641235 [Jatropha curcas]
17 Hb_009683_010 0.1481400559 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
18 Hb_005282_010 0.1489081276 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
19 Hb_029866_050 0.1500081845 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
20 Hb_003864_020 0.1513853099 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_013607_010 Hb_013607_010 Hb_002234_200 Hb_002234_200 Hb_013607_010--Hb_002234_200 Hb_000363_110 Hb_000363_110 Hb_013607_010--Hb_000363_110 Hb_127400_010 Hb_127400_010 Hb_013607_010--Hb_127400_010 Hb_001568_120 Hb_001568_120 Hb_013607_010--Hb_001568_120 Hb_029238_020 Hb_029238_020 Hb_013607_010--Hb_029238_020 Hb_009510_050 Hb_009510_050 Hb_013607_010--Hb_009510_050 Hb_001405_060 Hb_001405_060 Hb_002234_200--Hb_001405_060 Hb_005282_010 Hb_005282_010 Hb_002234_200--Hb_005282_010 Hb_002234_200--Hb_000363_110 Hb_008948_110 Hb_008948_110 Hb_002234_200--Hb_008948_110 Hb_098160_010 Hb_098160_010 Hb_002234_200--Hb_098160_010 Hb_000397_090 Hb_000397_090 Hb_000363_110--Hb_000397_090 Hb_001345_030 Hb_001345_030 Hb_000363_110--Hb_001345_030 Hb_000363_110--Hb_098160_010 Hb_000003_420 Hb_000003_420 Hb_000363_110--Hb_000003_420 Hb_019654_010 Hb_019654_010 Hb_127400_010--Hb_019654_010 Hb_041145_010 Hb_041145_010 Hb_127400_010--Hb_041145_010 Hb_127400_010--Hb_001568_120 Hb_000133_060 Hb_000133_060 Hb_127400_010--Hb_000133_060 Hb_133508_010 Hb_133508_010 Hb_127400_010--Hb_133508_010 Hb_000000_070 Hb_000000_070 Hb_001568_120--Hb_000000_070 Hb_117127_010 Hb_117127_010 Hb_001568_120--Hb_117127_010 Hb_006698_020 Hb_006698_020 Hb_001568_120--Hb_006698_020 Hb_029866_050 Hb_029866_050 Hb_001568_120--Hb_029866_050 Hb_009683_010 Hb_009683_010 Hb_001568_120--Hb_009683_010 Hb_001568_120--Hb_041145_010 Hb_000245_270 Hb_000245_270 Hb_029238_020--Hb_000245_270 Hb_116349_090 Hb_116349_090 Hb_029238_020--Hb_116349_090 Hb_000805_150 Hb_000805_150 Hb_029238_020--Hb_000805_150 Hb_001511_270 Hb_001511_270 Hb_029238_020--Hb_001511_270 Hb_029238_020--Hb_002234_200 Hb_000506_130 Hb_000506_130 Hb_029238_020--Hb_000506_130 Hb_003602_090 Hb_003602_090 Hb_009510_050--Hb_003602_090 Hb_006615_180 Hb_006615_180 Hb_009510_050--Hb_006615_180 Hb_082870_010 Hb_082870_010 Hb_009510_050--Hb_082870_010 Hb_009510_050--Hb_117127_010 Hb_000723_060 Hb_000723_060 Hb_009510_050--Hb_000723_060 Hb_017604_020 Hb_017604_020 Hb_009510_050--Hb_017604_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.05035 97.8092 26.6748 34.0261 0.781106 3.01794
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.300001 0.364779 0 9.16783 4.32942

CAGE analysis