Hb_030873_010

Information

Type -
Description -
Location Contig30873: 6926-23003
Sequence    

Annotation

kegg
ID csv:101231485
description putative cyclic nucleotide-gated ion channel 15-like
nr
ID XP_011657004.1
description PREDICTED: putative cyclic nucleotide-gated ion channel 15 isoform X2 [Cucumis sativus]
swissprot
ID Q9SL29
description Putative cyclic nucleotide-gated ion channel 15 OS=Arabidopsis thaliana GN=CNGC15 PE=3 SV=1
trembl
ID A0A0A0KGF9
description Uncharacterized protein OS=Cucumis sativus GN=Csa_6G146420 PE=4 SV=1
Gene Ontology
ID GO:0016020
description cyclic nucleotide-gated ion channel 15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030873_010 0.0 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 isoform X2 [Cucumis sativus]
2 Hb_001850_010 0.1214244237 - - PREDICTED: cytochrome P450 71B34-like [Jatropha curcas]
3 Hb_000119_050 0.1230126837 - - PREDICTED: transmembrane protein 45B-like [Jatropha curcas]
4 Hb_000522_020 0.1408594251 - - PREDICTED: two-pore potassium channel 1 [Jatropha curcas]
5 Hb_007590_040 0.1515737858 - - PREDICTED: vacuolar cation/proton exchanger 3-like [Jatropha curcas]
6 Hb_015473_020 0.1567059543 - - hypothetical protein B456_001G090400 [Gossypium raimondii]
7 Hb_028487_080 0.1671480698 - - Pectinesterase-1 precursor, putative [Ricinus communis]
8 Hb_001031_020 0.1700058289 - - hypothetical protein VITISV_000631 [Vitis vinifera]
9 Hb_000501_180 0.1710651644 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g67520 [Jatropha curcas]
10 Hb_006052_050 0.1715312293 - - hypothetical protein EUGRSUZ_A00568 [Eucalyptus grandis]
11 Hb_005081_060 0.1717835938 - - hypothetical protein EUGRSUZ_C00833 [Eucalyptus grandis]
12 Hb_039650_010 0.1807341959 - - cellulose synthase-like protein [Populus tomentosa]
13 Hb_000117_110 0.1814673118 - - transferase, putative [Ricinus communis]
14 Hb_000164_180 0.1840063139 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
15 Hb_006717_020 0.1842573886 - - calcium-dependent protein kinase [Hevea brasiliensis]
16 Hb_000767_040 0.1844543125 - - cytochrome P450, putative [Ricinus communis]
17 Hb_002218_060 0.1851052444 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001274_040 0.1866913408 - - PREDICTED: uncharacterized protein LOC105636321 [Jatropha curcas]
19 Hb_004940_090 0.1873765307 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
20 Hb_000286_180 0.1917428126 - - PREDICTED: dnaJ homolog subfamily B member 4 [Jatropha curcas]

Gene co-expression network

sample Hb_030873_010 Hb_030873_010 Hb_001850_010 Hb_001850_010 Hb_030873_010--Hb_001850_010 Hb_000119_050 Hb_000119_050 Hb_030873_010--Hb_000119_050 Hb_000522_020 Hb_000522_020 Hb_030873_010--Hb_000522_020 Hb_007590_040 Hb_007590_040 Hb_030873_010--Hb_007590_040 Hb_015473_020 Hb_015473_020 Hb_030873_010--Hb_015473_020 Hb_028487_080 Hb_028487_080 Hb_030873_010--Hb_028487_080 Hb_004940_090 Hb_004940_090 Hb_001850_010--Hb_004940_090 Hb_001850_010--Hb_000119_050 Hb_001850_010--Hb_000522_020 Hb_039650_010 Hb_039650_010 Hb_001850_010--Hb_039650_010 Hb_001850_010--Hb_015473_020 Hb_001274_040 Hb_001274_040 Hb_000119_050--Hb_001274_040 Hb_000767_040 Hb_000767_040 Hb_000119_050--Hb_000767_040 Hb_000111_130 Hb_000111_130 Hb_000119_050--Hb_000111_130 Hb_005081_060 Hb_005081_060 Hb_000119_050--Hb_005081_060 Hb_000522_020--Hb_007590_040 Hb_000501_180 Hb_000501_180 Hb_000522_020--Hb_000501_180 Hb_000522_020--Hb_015473_020 Hb_000522_020--Hb_000119_050 Hb_007590_040--Hb_000501_180 Hb_002221_020 Hb_002221_020 Hb_007590_040--Hb_002221_020 Hb_007590_040--Hb_001850_010 Hb_000915_220 Hb_000915_220 Hb_007590_040--Hb_000915_220 Hb_007590_040--Hb_015473_020 Hb_015473_020--Hb_028487_080 Hb_001821_070 Hb_001821_070 Hb_015473_020--Hb_001821_070 Hb_005529_050 Hb_005529_050 Hb_015473_020--Hb_005529_050 Hb_000846_020 Hb_000846_020 Hb_015473_020--Hb_000846_020 Hb_015473_020--Hb_000501_180 Hb_028487_080--Hb_005529_050 Hb_028487_080--Hb_001821_070 Hb_001031_020 Hb_001031_020 Hb_028487_080--Hb_001031_020 Hb_028487_080--Hb_000846_020 Hb_000635_170 Hb_000635_170 Hb_028487_080--Hb_000635_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.535355 0 0.0233696 0 0.00990129
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0266904 0.0617537

CAGE analysis