Hb_001227_040

Information

Type -
Description -
Location Contig1227: 74549-81702
Sequence    

Annotation

kegg
ID rcu:RCOM_1687250
description hypothetical protein
nr
ID XP_009614563.1
description PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06898: 80678-80924
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001227_040 0.0 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
2 Hb_000333_120 0.1490830778 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
3 Hb_008195_020 0.153904251 - - Vacuolar-processing enzyme precursor [Ricinus communis]
4 Hb_000465_380 0.1544286518 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_108055_010 0.1653421332 - - UDP-glucosyltransferase, putative [Ricinus communis]
6 Hb_002232_050 0.1653733427 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
7 Hb_129399_010 0.1656943787 - - cytochrome P450, putative [Ricinus communis]
8 Hb_000029_180 0.1665573034 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
9 Hb_011344_140 0.1717763102 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
10 Hb_001907_020 0.173614135 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
11 Hb_002045_220 0.1769682837 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
12 Hb_002995_030 0.185831741 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000668_160 0.1876252287 - - PREDICTED: sulfate transporter 1.3-like [Jatropha curcas]
14 Hb_000044_050 0.1889386618 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
15 Hb_002783_300 0.1891159527 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
16 Hb_002078_090 0.1891818634 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_009247_030 0.1922224683 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Jatropha curcas]
18 Hb_000343_260 0.1936447882 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
19 Hb_010921_060 0.1943628058 - - ATP binding protein, putative [Ricinus communis]
20 Hb_006718_040 0.194603517 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001227_040 Hb_001227_040 Hb_000333_120 Hb_000333_120 Hb_001227_040--Hb_000333_120 Hb_008195_020 Hb_008195_020 Hb_001227_040--Hb_008195_020 Hb_000465_380 Hb_000465_380 Hb_001227_040--Hb_000465_380 Hb_108055_010 Hb_108055_010 Hb_001227_040--Hb_108055_010 Hb_002232_050 Hb_002232_050 Hb_001227_040--Hb_002232_050 Hb_129399_010 Hb_129399_010 Hb_001227_040--Hb_129399_010 Hb_000333_120--Hb_108055_010 Hb_000705_130 Hb_000705_130 Hb_000333_120--Hb_000705_130 Hb_015882_020 Hb_015882_020 Hb_000333_120--Hb_015882_020 Hb_000333_120--Hb_000465_380 Hb_010962_030 Hb_010962_030 Hb_000333_120--Hb_010962_030 Hb_010921_060 Hb_010921_060 Hb_000333_120--Hb_010921_060 Hb_000044_050 Hb_000044_050 Hb_008195_020--Hb_000044_050 Hb_026053_030 Hb_026053_030 Hb_008195_020--Hb_026053_030 Hb_001907_020 Hb_001907_020 Hb_008195_020--Hb_001907_020 Hb_011344_140 Hb_011344_140 Hb_008195_020--Hb_011344_140 Hb_000417_150 Hb_000417_150 Hb_008195_020--Hb_000417_150 Hb_000236_430 Hb_000236_430 Hb_008195_020--Hb_000236_430 Hb_000029_180 Hb_000029_180 Hb_000465_380--Hb_000029_180 Hb_000465_380--Hb_108055_010 Hb_000465_380--Hb_010921_060 Hb_030370_070 Hb_030370_070 Hb_000465_380--Hb_030370_070 Hb_000465_380--Hb_129399_010 Hb_002239_020 Hb_002239_020 Hb_000465_380--Hb_002239_020 Hb_108055_010--Hb_129399_010 Hb_010327_010 Hb_010327_010 Hb_108055_010--Hb_010327_010 Hb_108055_010--Hb_010921_060 Hb_108055_010--Hb_000029_180 Hb_002475_130 Hb_002475_130 Hb_002232_050--Hb_002475_130 Hb_001921_010 Hb_001921_010 Hb_002232_050--Hb_001921_010 Hb_006718_040 Hb_006718_040 Hb_002232_050--Hb_006718_040 Hb_002232_050--Hb_000333_120 Hb_001946_060 Hb_001946_060 Hb_002232_050--Hb_001946_060 Hb_010620_020 Hb_010620_020 Hb_129399_010--Hb_010620_020 Hb_000146_110 Hb_000146_110 Hb_129399_010--Hb_000146_110 Hb_000003_620 Hb_000003_620 Hb_129399_010--Hb_000003_620 Hb_129399_010--Hb_010921_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0189172 0.801864 0.0572498 0.0480756 0 0.0309713
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.196168 0.284087

CAGE analysis