Hb_000236_430

Information

Type -
Description -
Location Contig236: 327074-331588
Sequence    

Annotation

kegg
ID tcc:TCM_030610
description Cellulose synthase like E1 isoform 1
nr
ID XP_012071262.1
description PREDICTED: uncharacterized protein LOC105633302 [Jatropha curcas]
swissprot
ID Q651X6
description Cellulose synthase-like protein E6 OS=Oryza sativa subsp. japonica GN=CSLE6 PE=2 SV=1
trembl
ID A0A067KWG3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01060 PE=4 SV=1
Gene Ontology
ID GO:0016021
description cellulose synthase-like protein e6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24721: 327143-328818 , PASA_asmbl_24722: 328981-329293 , PASA_asmbl_24723: 330109-330361 , PASA_asmbl_24724: 330448-331343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_430 0.0 - - PREDICTED: uncharacterized protein LOC105633302 [Jatropha curcas]
2 Hb_026053_030 0.1340976004 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
3 Hb_000417_150 0.1425852017 - - hypothetical protein JCGZ_21586 [Jatropha curcas]
4 Hb_172426_010 0.1485121308 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
5 Hb_008195_020 0.150912296 - - Vacuolar-processing enzyme precursor [Ricinus communis]
6 Hb_003727_060 0.1519118823 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_004063_010 0.1521848561 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_011242_070 0.1536364771 - - beta-cyanoalanine synthase [Hevea brasiliensis]
9 Hb_002045_220 0.1571110041 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
10 Hb_118046_010 0.1604239181 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
11 Hb_048476_070 0.161081589 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003442_120 0.161905737 - - hypothetical protein VITISV_019818 [Vitis vinifera]
13 Hb_000574_090 0.1622195968 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
14 Hb_004007_230 0.1639578855 - - PREDICTED: putative formamidase C869.04 isoform X1 [Jatropha curcas]
15 Hb_000044_050 0.1643026192 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
16 Hb_002815_040 0.1655407338 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
17 Hb_002585_060 0.1710352957 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
18 Hb_031949_010 0.172041419 - - -
19 Hb_001907_020 0.1757725985 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
20 Hb_001411_100 0.1812076657 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000236_430 Hb_000236_430 Hb_026053_030 Hb_026053_030 Hb_000236_430--Hb_026053_030 Hb_000417_150 Hb_000417_150 Hb_000236_430--Hb_000417_150 Hb_172426_010 Hb_172426_010 Hb_000236_430--Hb_172426_010 Hb_008195_020 Hb_008195_020 Hb_000236_430--Hb_008195_020 Hb_003727_060 Hb_003727_060 Hb_000236_430--Hb_003727_060 Hb_004063_010 Hb_004063_010 Hb_000236_430--Hb_004063_010 Hb_026053_030--Hb_000417_150 Hb_000044_050 Hb_000044_050 Hb_026053_030--Hb_000044_050 Hb_004007_230 Hb_004007_230 Hb_026053_030--Hb_004007_230 Hb_031949_010 Hb_031949_010 Hb_026053_030--Hb_031949_010 Hb_011344_140 Hb_011344_140 Hb_026053_030--Hb_011344_140 Hb_001907_020 Hb_001907_020 Hb_026053_030--Hb_001907_020 Hb_028872_100 Hb_028872_100 Hb_000417_150--Hb_028872_100 Hb_000417_150--Hb_004007_230 Hb_000417_150--Hb_031949_010 Hb_000417_150--Hb_000044_050 Hb_001411_100 Hb_001411_100 Hb_000417_150--Hb_001411_100 Hb_172426_010--Hb_000417_150 Hb_004994_200 Hb_004994_200 Hb_172426_010--Hb_004994_200 Hb_004884_210 Hb_004884_210 Hb_172426_010--Hb_004884_210 Hb_027337_050 Hb_027337_050 Hb_172426_010--Hb_027337_050 Hb_001205_170 Hb_001205_170 Hb_172426_010--Hb_001205_170 Hb_008195_020--Hb_000044_050 Hb_008195_020--Hb_026053_030 Hb_008195_020--Hb_001907_020 Hb_008195_020--Hb_011344_140 Hb_008195_020--Hb_000417_150 Hb_003727_060--Hb_004063_010 Hb_118046_010 Hb_118046_010 Hb_003727_060--Hb_118046_010 Hb_002585_060 Hb_002585_060 Hb_003727_060--Hb_002585_060 Hb_003442_120 Hb_003442_120 Hb_003727_060--Hb_003442_120 Hb_003938_100 Hb_003938_100 Hb_003727_060--Hb_003938_100 Hb_038190_030 Hb_038190_030 Hb_003727_060--Hb_038190_030 Hb_004063_010--Hb_118046_010 Hb_004063_010--Hb_003442_120 Hb_004063_010--Hb_002585_060 Hb_058095_030 Hb_058095_030 Hb_004063_010--Hb_058095_030 Hb_000028_270 Hb_000028_270 Hb_004063_010--Hb_000028_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0587115 8.89951 0.848326 0.5434 0.0361105 0.0342434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.103626 0.135904 0 3.3455 7.16756

CAGE analysis