Hb_002585_060

Information

Type -
Description -
Location Contig2585: 61383-70880
Sequence    

Annotation

kegg
ID bvg:104899128
description uncharacterized LOC104899128
nr
ID XP_010684566.1
description PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID E2DN01
description Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002585_060 0.0 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
2 Hb_004063_010 0.0774456276 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_003727_060 0.0871442835 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_058095_030 0.0888853119 - - -
5 Hb_138667_010 0.1189460866 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
6 Hb_000243_050 0.1218349898 - - ADP-ribosylation factor, putative [Ricinus communis]
7 Hb_000280_120 0.1246580875 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]
8 Hb_118046_010 0.1260133026 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
9 Hb_000028_270 0.1286542743 - - -
10 Hb_003938_100 0.1314619404 - - conserved hypothetical protein [Ricinus communis]
11 Hb_028872_040 0.1318982452 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_003442_120 0.1419469841 - - hypothetical protein VITISV_019818 [Vitis vinifera]
13 Hb_007709_020 0.1458541989 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
14 Hb_011242_070 0.1477891544 - - beta-cyanoalanine synthase [Hevea brasiliensis]
15 Hb_168909_010 0.1489490889 - - PREDICTED: uncharacterized protein LOC105640156 [Jatropha curcas]
16 Hb_005765_020 0.1509377915 - - -
17 Hb_004021_120 0.151669709 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
18 Hb_002815_040 0.1548525982 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
19 Hb_001301_070 0.1584045871 - - -
20 Hb_032299_070 0.1641197689 - - -

Gene co-expression network

sample Hb_002585_060 Hb_002585_060 Hb_004063_010 Hb_004063_010 Hb_002585_060--Hb_004063_010 Hb_003727_060 Hb_003727_060 Hb_002585_060--Hb_003727_060 Hb_058095_030 Hb_058095_030 Hb_002585_060--Hb_058095_030 Hb_138667_010 Hb_138667_010 Hb_002585_060--Hb_138667_010 Hb_000243_050 Hb_000243_050 Hb_002585_060--Hb_000243_050 Hb_000280_120 Hb_000280_120 Hb_002585_060--Hb_000280_120 Hb_004063_010--Hb_003727_060 Hb_118046_010 Hb_118046_010 Hb_004063_010--Hb_118046_010 Hb_003442_120 Hb_003442_120 Hb_004063_010--Hb_003442_120 Hb_004063_010--Hb_058095_030 Hb_000028_270 Hb_000028_270 Hb_004063_010--Hb_000028_270 Hb_003727_060--Hb_118046_010 Hb_003727_060--Hb_003442_120 Hb_003938_100 Hb_003938_100 Hb_003727_060--Hb_003938_100 Hb_038190_030 Hb_038190_030 Hb_003727_060--Hb_038190_030 Hb_058095_030--Hb_000028_270 Hb_005765_020 Hb_005765_020 Hb_058095_030--Hb_005765_020 Hb_058095_030--Hb_118046_010 Hb_008642_050 Hb_008642_050 Hb_058095_030--Hb_008642_050 Hb_138667_010--Hb_000280_120 Hb_138667_010--Hb_000243_050 Hb_028872_040 Hb_028872_040 Hb_138667_010--Hb_028872_040 Hb_138667_010--Hb_003938_100 Hb_007709_020 Hb_007709_020 Hb_138667_010--Hb_007709_020 Hb_168909_010 Hb_168909_010 Hb_138667_010--Hb_168909_010 Hb_000243_050--Hb_000280_120 Hb_000243_050--Hb_003938_100 Hb_000243_050--Hb_168909_010 Hb_001301_070 Hb_001301_070 Hb_000243_050--Hb_001301_070 Hb_000243_050--Hb_028872_040 Hb_000280_120--Hb_168909_010 Hb_000280_120--Hb_028872_040 Hb_000280_120--Hb_003938_100 Hb_006013_030 Hb_006013_030 Hb_000280_120--Hb_006013_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.27024 0.0209041 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.162437 0.303739

CAGE analysis