Hb_003442_120

Information

Type -
Description -
Location Contig3442: 133014-133949
Sequence    

Annotation

kegg
ID vvi:104879858
description uncharacterized LOC104879858
nr
ID CAN78664.1
description hypothetical protein VITISV_019818 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5B5G3
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_019818 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003442_120 0.0 - - hypothetical protein VITISV_019818 [Vitis vinifera]
2 Hb_118046_010 0.0253635481 - - PREDICTED: uncharacterized protein LOC102596706 [Solanum tuberosum]
3 Hb_002025_240 0.0755227106 - - -
4 Hb_004063_010 0.0756096438 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_130579_050 0.0844143542 - - hypothetical protein JCGZ_25577 [Jatropha curcas]
6 Hb_003727_060 0.088967761 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_000028_270 0.1205909023 - - -
8 Hb_004021_120 0.139011065 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
9 Hb_002585_060 0.1419469841 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
10 Hb_058095_030 0.158074889 - - -
11 Hb_000236_430 0.161905737 - - PREDICTED: uncharacterized protein LOC105633302 [Jatropha curcas]
12 Hb_027337_050 0.1800469129 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_012807_070 0.1949010947 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
14 Hb_026053_030 0.1955032867 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
15 Hb_038190_030 0.1955058134 - - -
16 Hb_009780_010 0.1976525818 - - conserved hypothetical protein [Ricinus communis]
17 Hb_167020_010 0.205285485 - - unnamed protein product [Vitis vinifera]
18 Hb_003938_100 0.2060298668 - - conserved hypothetical protein [Ricinus communis]
19 Hb_071130_020 0.2065225975 - - -
20 Hb_002571_050 0.2092224678 - - PREDICTED: cation/calcium exchanger 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003442_120 Hb_003442_120 Hb_118046_010 Hb_118046_010 Hb_003442_120--Hb_118046_010 Hb_002025_240 Hb_002025_240 Hb_003442_120--Hb_002025_240 Hb_004063_010 Hb_004063_010 Hb_003442_120--Hb_004063_010 Hb_130579_050 Hb_130579_050 Hb_003442_120--Hb_130579_050 Hb_003727_060 Hb_003727_060 Hb_003442_120--Hb_003727_060 Hb_000028_270 Hb_000028_270 Hb_003442_120--Hb_000028_270 Hb_118046_010--Hb_004063_010 Hb_118046_010--Hb_003727_060 Hb_118046_010--Hb_130579_050 Hb_118046_010--Hb_002025_240 Hb_118046_010--Hb_000028_270 Hb_002025_240--Hb_130579_050 Hb_002025_240--Hb_004063_010 Hb_002025_240--Hb_003727_060 Hb_027337_050 Hb_027337_050 Hb_002025_240--Hb_027337_050 Hb_004063_010--Hb_003727_060 Hb_002585_060 Hb_002585_060 Hb_004063_010--Hb_002585_060 Hb_058095_030 Hb_058095_030 Hb_004063_010--Hb_058095_030 Hb_004063_010--Hb_000028_270 Hb_130579_050--Hb_004063_010 Hb_130579_050--Hb_003727_060 Hb_130579_050--Hb_000028_270 Hb_003727_060--Hb_002585_060 Hb_003938_100 Hb_003938_100 Hb_003727_060--Hb_003938_100 Hb_038190_030 Hb_038190_030 Hb_003727_060--Hb_038190_030 Hb_000028_270--Hb_058095_030 Hb_005765_020 Hb_005765_020 Hb_000028_270--Hb_005765_020 Hb_000028_270--Hb_002585_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.116566 0.0190543 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0348894 0.088153

CAGE analysis