Hb_038190_030

Information

Type -
Description -
Location Contig38190: 54502-54714
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_038190_030 0.0 - - -
2 Hb_003938_100 0.0888240691 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005081_090 0.1121805118 - - -
4 Hb_002056_140 0.1122303171 - - -
5 Hb_007709_020 0.1216371876 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
6 Hb_003727_060 0.130989935 - - nucleic acid binding protein, putative [Ricinus communis]
7 Hb_138667_010 0.1393359338 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
8 Hb_028872_040 0.1419410631 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
9 Hb_000243_050 0.1431715826 - - ADP-ribosylation factor, putative [Ricinus communis]
10 Hb_001899_040 0.1528059037 - - PREDICTED: cyclic nucleotide-gated ion channel 2-like [Jatropha curcas]
11 Hb_004063_010 0.1619477496 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_004191_030 0.1671000268 - - hypothetical protein POPTR_0013s13140g [Populus trichocarpa]
13 Hb_000280_120 0.1698598342 - - PREDICTED: uncharacterized protein LOC105643934 [Jatropha curcas]
14 Hb_001301_070 0.170423874 - - -
15 Hb_002585_060 0.1749225306 - - PREDICTED: uncharacterized protein LOC104899128, partial [Beta vulgaris subsp. vulgaris]
16 Hb_000192_060 0.1777195624 - - -
17 Hb_009898_060 0.1804403389 - - hypothetical protein POPTR_0007s09865g [Populus trichocarpa]
18 Hb_002571_050 0.1828356274 - - PREDICTED: cation/calcium exchanger 1 [Jatropha curcas]
19 Hb_151694_010 0.1829836247 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
20 Hb_151411_010 0.1863718443 - - -

Gene co-expression network

sample Hb_038190_030 Hb_038190_030 Hb_003938_100 Hb_003938_100 Hb_038190_030--Hb_003938_100 Hb_005081_090 Hb_005081_090 Hb_038190_030--Hb_005081_090 Hb_002056_140 Hb_002056_140 Hb_038190_030--Hb_002056_140 Hb_007709_020 Hb_007709_020 Hb_038190_030--Hb_007709_020 Hb_003727_060 Hb_003727_060 Hb_038190_030--Hb_003727_060 Hb_138667_010 Hb_138667_010 Hb_038190_030--Hb_138667_010 Hb_000243_050 Hb_000243_050 Hb_003938_100--Hb_000243_050 Hb_003938_100--Hb_138667_010 Hb_001301_070 Hb_001301_070 Hb_003938_100--Hb_001301_070 Hb_000280_120 Hb_000280_120 Hb_003938_100--Hb_000280_120 Hb_003938_100--Hb_002056_140 Hb_167020_010 Hb_167020_010 Hb_005081_090--Hb_167020_010 Hb_002221_020 Hb_002221_020 Hb_005081_090--Hb_002221_020 Hb_002571_050 Hb_002571_050 Hb_005081_090--Hb_002571_050 Hb_001899_040 Hb_001899_040 Hb_005081_090--Hb_001899_040 Hb_005081_090--Hb_007709_020 Hb_004191_030 Hb_004191_030 Hb_002056_140--Hb_004191_030 Hb_005852_010 Hb_005852_010 Hb_002056_140--Hb_005852_010 Hb_151411_010 Hb_151411_010 Hb_002056_140--Hb_151411_010 Hb_000192_060 Hb_000192_060 Hb_002056_140--Hb_000192_060 Hb_028872_040 Hb_028872_040 Hb_007709_020--Hb_028872_040 Hb_002142_010 Hb_002142_010 Hb_007709_020--Hb_002142_010 Hb_151694_010 Hb_151694_010 Hb_007709_020--Hb_151694_010 Hb_007709_020--Hb_138667_010 Hb_007709_020--Hb_000280_120 Hb_007709_020--Hb_003938_100 Hb_004063_010 Hb_004063_010 Hb_003727_060--Hb_004063_010 Hb_118046_010 Hb_118046_010 Hb_003727_060--Hb_118046_010 Hb_002585_060 Hb_002585_060 Hb_003727_060--Hb_002585_060 Hb_003442_120 Hb_003442_120 Hb_003727_060--Hb_003442_120 Hb_003727_060--Hb_003938_100 Hb_138667_010--Hb_000280_120 Hb_138667_010--Hb_000243_050 Hb_138667_010--Hb_028872_040 Hb_168909_010 Hb_168909_010 Hb_138667_010--Hb_168909_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.53517 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.41934 1.05741

CAGE analysis