Hb_167020_010

Information

Type -
Description -
Location Contig167020: 4825-5937
Sequence    

Annotation

kegg
ID vvi:100251452
description probable LRR receptor-like serine/threonine-protein kinase At1g05700
nr
ID CBI36022.3
description unnamed protein product [Vitis vinifera]
swissprot
ID C0LGR6
description Probable LRR receptor-like serine/threonine-protein kinase At4g29180 OS=Arabidopsis thaliana GN=At4g29180 PE=2 SV=2
trembl
ID F6HY71
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g03030 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at1g05700

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_167020_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_005081_090 0.1175550329 - - -
3 Hb_004021_120 0.1357674023 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
4 Hb_000915_220 0.1600537572 - - Lactoylglutathione lyase / glyoxalase I family protein [Theobroma cacao]
5 Hb_001477_120 0.1619595718 - - hypothetical protein JCGZ_25721 [Jatropha curcas]
6 Hb_002571_050 0.1629319058 - - PREDICTED: cation/calcium exchanger 1 [Jatropha curcas]
7 Hb_129399_010 0.1758448966 - - cytochrome P450, putative [Ricinus communis]
8 Hb_151694_010 0.1805579235 - - PREDICTED: BURP domain-containing protein 17-like isoform X2 [Jatropha curcas]
9 Hb_038190_030 0.1870313283 - - -
10 Hb_003727_060 0.1934218017 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_007709_020 0.1944226416 - - PREDICTED: uncharacterized protein LOC105049010 [Elaeis guineensis]
12 Hb_108055_010 0.1998923252 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_002221_020 0.2001484315 - - hypothetical protein B456_008G083700 [Gossypium raimondii]
14 Hb_000003_620 0.2003116299 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
15 Hb_001227_040 0.2015447746 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
16 Hb_001365_040 0.202045133 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X2 [Populus euphratica]
17 Hb_001907_020 0.2022172976 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
18 Hb_010620_020 0.2031684767 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_004055_100 0.2045273413 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
20 Hb_003442_120 0.205285485 - - hypothetical protein VITISV_019818 [Vitis vinifera]

Gene co-expression network

sample Hb_167020_010 Hb_167020_010 Hb_005081_090 Hb_005081_090 Hb_167020_010--Hb_005081_090 Hb_004021_120 Hb_004021_120 Hb_167020_010--Hb_004021_120 Hb_000915_220 Hb_000915_220 Hb_167020_010--Hb_000915_220 Hb_001477_120 Hb_001477_120 Hb_167020_010--Hb_001477_120 Hb_002571_050 Hb_002571_050 Hb_167020_010--Hb_002571_050 Hb_129399_010 Hb_129399_010 Hb_167020_010--Hb_129399_010 Hb_038190_030 Hb_038190_030 Hb_005081_090--Hb_038190_030 Hb_002221_020 Hb_002221_020 Hb_005081_090--Hb_002221_020 Hb_005081_090--Hb_002571_050 Hb_001899_040 Hb_001899_040 Hb_005081_090--Hb_001899_040 Hb_007709_020 Hb_007709_020 Hb_005081_090--Hb_007709_020 Hb_003442_120 Hb_003442_120 Hb_004021_120--Hb_003442_120 Hb_003727_060 Hb_003727_060 Hb_004021_120--Hb_003727_060 Hb_118046_010 Hb_118046_010 Hb_004021_120--Hb_118046_010 Hb_004063_010 Hb_004063_010 Hb_004021_120--Hb_004063_010 Hb_002585_060 Hb_002585_060 Hb_004021_120--Hb_002585_060 Hb_000915_220--Hb_002221_020 Hb_007590_040 Hb_007590_040 Hb_000915_220--Hb_007590_040 Hb_067034_010 Hb_067034_010 Hb_000915_220--Hb_067034_010 Hb_000915_220--Hb_002571_050 Hb_001850_010 Hb_001850_010 Hb_000915_220--Hb_001850_010 Hb_006052_050 Hb_006052_050 Hb_000915_220--Hb_006052_050 Hb_001365_040 Hb_001365_040 Hb_001477_120--Hb_001365_040 Hb_169388_010 Hb_169388_010 Hb_001477_120--Hb_169388_010 Hb_002019_040 Hb_002019_040 Hb_001477_120--Hb_002019_040 Hb_017987_080 Hb_017987_080 Hb_001477_120--Hb_017987_080 Hb_001363_010 Hb_001363_010 Hb_001477_120--Hb_001363_010 Hb_002571_050--Hb_002221_020 Hb_002571_050--Hb_001899_040 Hb_000002_280 Hb_000002_280 Hb_002571_050--Hb_000002_280 Hb_000300_240 Hb_000300_240 Hb_002571_050--Hb_000300_240 Hb_108055_010 Hb_108055_010 Hb_129399_010--Hb_108055_010 Hb_000465_380 Hb_000465_380 Hb_129399_010--Hb_000465_380 Hb_010620_020 Hb_010620_020 Hb_129399_010--Hb_010620_020 Hb_000146_110 Hb_000146_110 Hb_129399_010--Hb_000146_110 Hb_000003_620 Hb_000003_620 Hb_129399_010--Hb_000003_620 Hb_010921_060 Hb_010921_060 Hb_129399_010--Hb_010921_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.738971 0.0226914 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.22079 0.218394

CAGE analysis