Hb_017987_080

Information

Type -
Description -
Location Contig17987: 59416-59804
Sequence    

Annotation

kegg
ID tcc:TCM_001832
description hypothetical protein
nr
ID XP_007048818.1
description Uncharacterized protein TCM_001832 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DK05
description Uncharacterized protein OS=Theobroma cacao GN=TCM_001832 PE=4 SV=1
Gene Ontology
ID GO:0097159
description Uncharacterized protein TCM_001832

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017987_080 0.0 - - Uncharacterized protein TCM_001832 [Theobroma cacao]
2 Hb_001477_120 0.1642295022 - - hypothetical protein JCGZ_25721 [Jatropha curcas]
3 Hb_169388_010 0.1795088004 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
4 Hb_002019_040 0.1876997904 - - hypothetical protein PRUPE_ppb016160mg, partial [Prunus persica]
5 Hb_004324_410 0.1898534548 - - hypothetical protein JCGZ_26025 [Jatropha curcas]
6 Hb_002929_100 0.1912750356 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_001363_010 0.1925279689 - - hypothetical protein CISIN_1g027763mg [Citrus sinensis]
8 Hb_004970_130 0.2003189387 - - PREDICTED: uncharacterized protein LOC105633891 [Jatropha curcas]
9 Hb_001365_040 0.2110781278 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X2 [Populus euphratica]
10 Hb_005396_100 0.2120537547 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000977_160 0.2203712235 - - Serine-threonine protein kinase, plant-type, putative [Theobroma cacao]
12 Hb_001363_030 0.2205656459 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Populus euphratica]
13 Hb_032651_060 0.2210351787 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_001903_020 0.2211951165 - - -
15 Hb_002025_370 0.224407131 - - monooxygenase, putative [Ricinus communis]
16 Hb_003851_050 0.2245367151 - - oligopeptide transporter, putative [Ricinus communis]
17 Hb_001810_010 0.2258451559 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
18 Hb_006353_010 0.2283467295 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
19 Hb_188168_010 0.2283928132 - - Arylacetamide deacetylase, putative [Ricinus communis]
20 Hb_012268_010 0.2299500842 - - glutamic acid-rich protein [Manihot esculenta]

Gene co-expression network

sample Hb_017987_080 Hb_017987_080 Hb_001477_120 Hb_001477_120 Hb_017987_080--Hb_001477_120 Hb_169388_010 Hb_169388_010 Hb_017987_080--Hb_169388_010 Hb_002019_040 Hb_002019_040 Hb_017987_080--Hb_002019_040 Hb_004324_410 Hb_004324_410 Hb_017987_080--Hb_004324_410 Hb_002929_100 Hb_002929_100 Hb_017987_080--Hb_002929_100 Hb_001363_010 Hb_001363_010 Hb_017987_080--Hb_001363_010 Hb_001365_040 Hb_001365_040 Hb_001477_120--Hb_001365_040 Hb_001477_120--Hb_169388_010 Hb_001477_120--Hb_002019_040 Hb_167020_010 Hb_167020_010 Hb_001477_120--Hb_167020_010 Hb_001477_120--Hb_001363_010 Hb_018563_040 Hb_018563_040 Hb_169388_010--Hb_018563_040 Hb_003385_090 Hb_003385_090 Hb_169388_010--Hb_003385_090 Hb_032651_060 Hb_032651_060 Hb_169388_010--Hb_032651_060 Hb_004619_010 Hb_004619_010 Hb_169388_010--Hb_004619_010 Hb_169388_010--Hb_001363_010 Hb_001454_160 Hb_001454_160 Hb_169388_010--Hb_001454_160 Hb_002025_370 Hb_002025_370 Hb_002019_040--Hb_002025_370 Hb_004940_090 Hb_004940_090 Hb_002019_040--Hb_004940_090 Hb_067034_010 Hb_067034_010 Hb_002019_040--Hb_067034_010 Hb_006353_010 Hb_006353_010 Hb_002019_040--Hb_006353_010 Hb_000284_060 Hb_000284_060 Hb_002019_040--Hb_000284_060 Hb_001363_030 Hb_001363_030 Hb_004324_410--Hb_001363_030 Hb_004970_130 Hb_004970_130 Hb_004324_410--Hb_004970_130 Hb_004324_410--Hb_001365_040 Hb_000009_260 Hb_000009_260 Hb_004324_410--Hb_000009_260 Hb_004324_410--Hb_002025_370 Hb_001810_010 Hb_001810_010 Hb_004324_410--Hb_001810_010 Hb_006052_050 Hb_006052_050 Hb_002929_100--Hb_006052_050 Hb_002929_100--Hb_004324_410 Hb_002929_100--Hb_002019_040 Hb_002232_050 Hb_002232_050 Hb_002929_100--Hb_002232_050 Hb_002929_100--Hb_001363_030 Hb_005396_100 Hb_005396_100 Hb_001363_010--Hb_005396_100 Hb_000977_160 Hb_000977_160 Hb_001363_010--Hb_000977_160 Hb_000535_030 Hb_000535_030 Hb_001363_010--Hb_000535_030 Hb_001363_010--Hb_003385_090 Hb_001363_010--Hb_032651_060 Hb_012268_010 Hb_012268_010 Hb_001363_010--Hb_012268_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.79048 0 0 0.188796 0.0918389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.30802 0.317872

CAGE analysis