Hb_002019_040

Information

Type -
Description -
Location Contig2019: 59465-70936
Sequence    

Annotation

kegg
ID pper:PRUPE_ppb016160mg
description hypothetical protein
nr
ID XP_007219915.1
description hypothetical protein PRUPE_ppb016160mg, partial [Prunus persica]
swissprot
ID Q9SKK8
description RING-H2 finger protein ATL22 OS=Arabidopsis thaliana GN=ATL22 PE=2 SV=2
trembl
ID M5X5B2
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppb016160mg PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20534: 70294-70706
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002019_040 0.0 - - hypothetical protein PRUPE_ppb016160mg, partial [Prunus persica]
2 Hb_002025_370 0.1528692996 - - monooxygenase, putative [Ricinus communis]
3 Hb_001477_120 0.1549753271 - - hypothetical protein JCGZ_25721 [Jatropha curcas]
4 Hb_004940_090 0.1625751223 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
5 Hb_067034_010 0.1631713228 - - PREDICTED: vacuolar cation/proton exchanger 3-like [Jatropha curcas]
6 Hb_006353_010 0.16353406 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
7 Hb_000284_060 0.1696634192 desease resistance Gene Name: NB-ARC disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula]
8 Hb_126024_010 0.1700769219 - - PREDICTED: probable aldo-keto reductase 1 [Populus euphratica]
9 Hb_001365_040 0.1754732357 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 isoform X2 [Populus euphratica]
10 Hb_001363_010 0.1784917591 - - hypothetical protein CISIN_1g027763mg [Citrus sinensis]
11 Hb_001810_010 0.1796000556 - - PREDICTED: wall-associated receptor kinase-like 1 [Nelumbo nucifera]
12 Hb_001363_030 0.1797443903 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Populus euphratica]
13 Hb_000977_160 0.1800627208 - - Serine-threonine protein kinase, plant-type, putative [Theobroma cacao]
14 Hb_005396_100 0.1875786635 - - conserved hypothetical protein [Ricinus communis]
15 Hb_017987_080 0.1876997904 - - Uncharacterized protein TCM_001832 [Theobroma cacao]
16 Hb_000915_220 0.1907248442 - - Lactoylglutathione lyase / glyoxalase I family protein [Theobroma cacao]
17 Hb_002648_020 0.1954278729 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Populus euphratica]
18 Hb_005000_230 0.1963493191 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
19 Hb_004970_130 0.1973431252 - - PREDICTED: uncharacterized protein LOC105633891 [Jatropha curcas]
20 Hb_039650_010 0.1988428728 - - cellulose synthase-like protein [Populus tomentosa]

Gene co-expression network

sample Hb_002019_040 Hb_002019_040 Hb_002025_370 Hb_002025_370 Hb_002019_040--Hb_002025_370 Hb_001477_120 Hb_001477_120 Hb_002019_040--Hb_001477_120 Hb_004940_090 Hb_004940_090 Hb_002019_040--Hb_004940_090 Hb_067034_010 Hb_067034_010 Hb_002019_040--Hb_067034_010 Hb_006353_010 Hb_006353_010 Hb_002019_040--Hb_006353_010 Hb_000284_060 Hb_000284_060 Hb_002019_040--Hb_000284_060 Hb_039650_010 Hb_039650_010 Hb_002025_370--Hb_039650_010 Hb_000111_130 Hb_000111_130 Hb_002025_370--Hb_000111_130 Hb_002025_370--Hb_004940_090 Hb_001365_040 Hb_001365_040 Hb_002025_370--Hb_001365_040 Hb_001274_040 Hb_001274_040 Hb_002025_370--Hb_001274_040 Hb_008707_020 Hb_008707_020 Hb_002025_370--Hb_008707_020 Hb_001477_120--Hb_001365_040 Hb_169388_010 Hb_169388_010 Hb_001477_120--Hb_169388_010 Hb_167020_010 Hb_167020_010 Hb_001477_120--Hb_167020_010 Hb_017987_080 Hb_017987_080 Hb_001477_120--Hb_017987_080 Hb_001363_010 Hb_001363_010 Hb_001477_120--Hb_001363_010 Hb_001850_010 Hb_001850_010 Hb_004940_090--Hb_001850_010 Hb_004940_090--Hb_039650_010 Hb_004940_090--Hb_006353_010 Hb_000871_020 Hb_000871_020 Hb_004940_090--Hb_000871_020 Hb_004940_090--Hb_000284_060 Hb_067034_010--Hb_002025_370 Hb_002648_020 Hb_002648_020 Hb_067034_010--Hb_002648_020 Hb_005000_230 Hb_005000_230 Hb_067034_010--Hb_005000_230 Hb_067034_010--Hb_004940_090 Hb_067034_010--Hb_039650_010 Hb_000915_220 Hb_000915_220 Hb_067034_010--Hb_000915_220 Hb_001271_040 Hb_001271_040 Hb_006353_010--Hb_001271_040 Hb_011924_010 Hb_011924_010 Hb_006353_010--Hb_011924_010 Hb_068447_010 Hb_068447_010 Hb_006353_010--Hb_068447_010 Hb_101778_020 Hb_101778_020 Hb_006353_010--Hb_101778_020 Hb_007676_070 Hb_007676_070 Hb_006353_010--Hb_007676_070 Hb_006586_020 Hb_006586_020 Hb_006353_010--Hb_006586_020 Hb_011924_030 Hb_011924_030 Hb_000284_060--Hb_011924_030 Hb_000284_060--Hb_039650_010 Hb_000035_360 Hb_000035_360 Hb_000284_060--Hb_000035_360 Hb_000284_060--Hb_008707_020 Hb_000284_060--Hb_000871_020 Hb_000233_060 Hb_000233_060 Hb_000284_060--Hb_000233_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0132325 2.44729 0.0162658 0 0.00998498 0.00933707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0242496 0 0.036116 0.508909 0.160972

CAGE analysis