Hb_067034_010

Information

Type -
Description -
Location Contig67034: 6789-9237
Sequence    

Annotation

kegg
ID pop:POPTR_0001s25830g
description POPTRDRAFT_172311; hypothetical protein
nr
ID XP_012067616.1
description PREDICTED: vacuolar cation/proton exchanger 3-like [Jatropha curcas]
swissprot
ID Q93Z81
description Vacuolar cation/proton exchanger 3 OS=Arabidopsis thaliana GN=CAX3 PE=1 SV=1
trembl
ID B9GII2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s25830g PE=4 SV=2
Gene Ontology
ID GO:0016021
description vacuolar cation proton exchanger 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_067034_010 0.0 - - PREDICTED: vacuolar cation/proton exchanger 3-like [Jatropha curcas]
2 Hb_002025_370 0.1245085331 - - monooxygenase, putative [Ricinus communis]
3 Hb_002648_020 0.1280980536 transcription factor TF Family: MYB PREDICTED: myb-related protein 330-like [Populus euphratica]
4 Hb_005000_230 0.1298338451 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
5 Hb_004940_090 0.135526162 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
6 Hb_039650_010 0.1356428511 - - cellulose synthase-like protein [Populus tomentosa]
7 Hb_000915_220 0.1430457688 - - Lactoylglutathione lyase / glyoxalase I family protein [Theobroma cacao]
8 Hb_006353_010 0.1467885941 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
9 Hb_006124_040 0.1629198623 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
10 Hb_002019_040 0.1631713228 - - hypothetical protein PRUPE_ppb016160mg, partial [Prunus persica]
11 Hb_001850_010 0.1642097553 - - PREDICTED: cytochrome P450 71B34-like [Jatropha curcas]
12 Hb_000284_060 0.1655013722 desease resistance Gene Name: NB-ARC disease resistance protein (TIR-NBS-LRR class), putative [Medicago truncatula]
13 Hb_126024_010 0.166222372 - - PREDICTED: probable aldo-keto reductase 1 [Populus euphratica]
14 Hb_006452_140 0.1679664981 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
15 Hb_000871_020 0.1692988469 - - receptor-kinase, putative [Ricinus communis]
16 Hb_011924_030 0.1699406401 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_008707_020 0.1706049963 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000164_180 0.1706819424 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
19 Hb_001403_070 0.1711881542 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X1 [Populus euphratica]
20 Hb_007850_050 0.1739097161 - - flavonoid 3-hydroxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_067034_010 Hb_067034_010 Hb_002025_370 Hb_002025_370 Hb_067034_010--Hb_002025_370 Hb_002648_020 Hb_002648_020 Hb_067034_010--Hb_002648_020 Hb_005000_230 Hb_005000_230 Hb_067034_010--Hb_005000_230 Hb_004940_090 Hb_004940_090 Hb_067034_010--Hb_004940_090 Hb_039650_010 Hb_039650_010 Hb_067034_010--Hb_039650_010 Hb_000915_220 Hb_000915_220 Hb_067034_010--Hb_000915_220 Hb_002025_370--Hb_039650_010 Hb_000111_130 Hb_000111_130 Hb_002025_370--Hb_000111_130 Hb_002025_370--Hb_004940_090 Hb_001365_040 Hb_001365_040 Hb_002025_370--Hb_001365_040 Hb_001274_040 Hb_001274_040 Hb_002025_370--Hb_001274_040 Hb_008707_020 Hb_008707_020 Hb_002025_370--Hb_008707_020 Hb_006124_040 Hb_006124_040 Hb_002648_020--Hb_006124_040 Hb_006452_140 Hb_006452_140 Hb_002648_020--Hb_006452_140 Hb_006353_010 Hb_006353_010 Hb_002648_020--Hb_006353_010 Hb_001403_070 Hb_001403_070 Hb_002648_020--Hb_001403_070 Hb_001268_070 Hb_001268_070 Hb_002648_020--Hb_001268_070 Hb_003683_090 Hb_003683_090 Hb_002648_020--Hb_003683_090 Hb_005000_230--Hb_039650_010 Hb_005000_230--Hb_008707_020 Hb_011924_030 Hb_011924_030 Hb_005000_230--Hb_011924_030 Hb_000284_060 Hb_000284_060 Hb_005000_230--Hb_000284_060 Hb_005000_230--Hb_001403_070 Hb_007850_050 Hb_007850_050 Hb_005000_230--Hb_007850_050 Hb_001850_010 Hb_001850_010 Hb_004940_090--Hb_001850_010 Hb_004940_090--Hb_039650_010 Hb_004940_090--Hb_006353_010 Hb_000871_020 Hb_000871_020 Hb_004940_090--Hb_000871_020 Hb_004940_090--Hb_000284_060 Hb_039650_010--Hb_008707_020 Hb_039650_010--Hb_011924_030 Hb_039650_010--Hb_000284_060 Hb_005081_060 Hb_005081_060 Hb_039650_010--Hb_005081_060 Hb_002221_020 Hb_002221_020 Hb_000915_220--Hb_002221_020 Hb_007590_040 Hb_007590_040 Hb_000915_220--Hb_007590_040 Hb_002571_050 Hb_002571_050 Hb_000915_220--Hb_002571_050 Hb_000915_220--Hb_001850_010 Hb_006052_050 Hb_006052_050 Hb_000915_220--Hb_006052_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.63681 0.0841572 0 0.0156706 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0280554 0 0.41505 0.175176

CAGE analysis