Hb_000009_260

Information

Type -
Description -
Location Contig9: 277817-283257
Sequence    

Annotation

kegg
ID rcu:RCOM_0411610
description hypothetical protein
nr
ID XP_012079099.1
description PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
swissprot
ID P38279
description Probable vacuolar amino acid transporter YPQ3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTC2 PE=1 SV=1
trembl
ID A0A067KHT5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12276 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable vacuolar amino acid transporter ypq1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_260 0.0 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
2 Hb_004041_070 0.1131440039 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003793_020 0.139885164 - - conserved hypothetical protein [Ricinus communis]
4 Hb_102408_010 0.1413203488 - - hypothetical protein JCGZ_27060 [Jatropha curcas]
5 Hb_004044_060 0.1581379076 - - conserved hypothetical protein [Ricinus communis]
6 Hb_012278_010 0.1788588305 - - -
7 Hb_004324_410 0.1792604659 - - hypothetical protein JCGZ_26025 [Jatropha curcas]
8 Hb_128912_010 0.2097620067 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
9 Hb_124302_030 0.2125619454 - - PREDICTED: serine carboxypeptidase-like [Beta vulgaris subsp. vulgaris]
10 Hb_000844_020 0.2298519119 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.6 [Jatropha curcas]
11 Hb_000796_100 0.2351946157 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
12 Hb_047923_020 0.2378498584 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_002067_110 0.239950125 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Populus euphratica]
14 Hb_007785_020 0.2406122522 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
15 Hb_004604_020 0.2407208788 - - PREDICTED: uncharacterized protein LOC102581016 [Solanum tuberosum]
16 Hb_064855_010 0.2407217378 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_066262_020 0.2410862669 - - hypothetical protein JCGZ_14803 [Jatropha curcas]
18 Hb_002701_140 0.2434266987 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
19 Hb_001331_050 0.244824333 - - hypothetical protein VITISV_022439 [Vitis vinifera]
20 Hb_045810_010 0.2452741559 - - PREDICTED: laccase-12-like [Jatropha curcas]

Gene co-expression network

sample Hb_000009_260 Hb_000009_260 Hb_004041_070 Hb_004041_070 Hb_000009_260--Hb_004041_070 Hb_003793_020 Hb_003793_020 Hb_000009_260--Hb_003793_020 Hb_102408_010 Hb_102408_010 Hb_000009_260--Hb_102408_010 Hb_004044_060 Hb_004044_060 Hb_000009_260--Hb_004044_060 Hb_012278_010 Hb_012278_010 Hb_000009_260--Hb_012278_010 Hb_004324_410 Hb_004324_410 Hb_000009_260--Hb_004324_410 Hb_004041_070--Hb_102408_010 Hb_004041_070--Hb_003793_020 Hb_004041_070--Hb_012278_010 Hb_004604_020 Hb_004604_020 Hb_004041_070--Hb_004604_020 Hb_004041_070--Hb_004044_060 Hb_003793_020--Hb_004604_020 Hb_047923_020 Hb_047923_020 Hb_003793_020--Hb_047923_020 Hb_003793_020--Hb_004044_060 Hb_003793_020--Hb_102408_010 Hb_102408_010--Hb_012278_010 Hb_000994_010 Hb_000994_010 Hb_102408_010--Hb_000994_010 Hb_001081_040 Hb_001081_040 Hb_102408_010--Hb_001081_040 Hb_128912_010 Hb_128912_010 Hb_004044_060--Hb_128912_010 Hb_004044_060--Hb_047923_020 Hb_001545_220 Hb_001545_220 Hb_004044_060--Hb_001545_220 Hb_004044_060--Hb_004324_410 Hb_034558_010 Hb_034558_010 Hb_012278_010--Hb_034558_010 Hb_128894_010 Hb_128894_010 Hb_012278_010--Hb_128894_010 Hb_007658_030 Hb_007658_030 Hb_012278_010--Hb_007658_030 Hb_001363_030 Hb_001363_030 Hb_004324_410--Hb_001363_030 Hb_004970_130 Hb_004970_130 Hb_004324_410--Hb_004970_130 Hb_001365_040 Hb_001365_040 Hb_004324_410--Hb_001365_040 Hb_002025_370 Hb_002025_370 Hb_004324_410--Hb_002025_370 Hb_001810_010 Hb_001810_010 Hb_004324_410--Hb_001810_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.678648 0 0.0163694 0.096456 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.126587 0

CAGE analysis