Hb_004041_070

Information

Type -
Description -
Location Contig4041: 67552-68450
Sequence    

Annotation

kegg
ID rcu:RCOM_0714630
description hypothetical protein
nr
ID XP_002529720.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SUQ1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0714630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004041_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_102408_010 0.089365081 - - hypothetical protein JCGZ_27060 [Jatropha curcas]
3 Hb_003793_020 0.099065839 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000009_260 0.1131440039 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
5 Hb_012278_010 0.1443656076 - - -
6 Hb_004604_020 0.2134507747 - - PREDICTED: uncharacterized protein LOC102581016 [Solanum tuberosum]
7 Hb_004044_060 0.2187222521 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000184_080 0.2283551844 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
9 Hb_000994_010 0.2314762652 - - hypothetical protein JCGZ_13899 [Jatropha curcas]
10 Hb_001081_040 0.2321607381 - - hypothetical protein MIMGU_mgv11b021166mg, partial [Erythranthe guttata]
11 Hb_047923_020 0.2362352618 - - polyprotein [Citrus endogenous pararetrovirus]
12 Hb_000336_300 0.2392943393 - - -
13 Hb_004324_410 0.2402196819 - - hypothetical protein JCGZ_26025 [Jatropha curcas]
14 Hb_000016_010 0.2588239254 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
15 Hb_008424_010 0.259387306 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_041177_010 0.2717407132 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
17 Hb_004829_050 0.2733305444 - - hypothetical protein TRIUR3_09654 [Triticum urartu]
18 Hb_011639_130 0.2733349169 - - mads box protein, putative [Ricinus communis]
19 Hb_001403_100 0.2734267129 - - hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]
20 Hb_001104_260 0.2734384932 - - hypothetical protein JCGZ_23628 [Jatropha curcas]

Gene co-expression network

sample Hb_004041_070 Hb_004041_070 Hb_102408_010 Hb_102408_010 Hb_004041_070--Hb_102408_010 Hb_003793_020 Hb_003793_020 Hb_004041_070--Hb_003793_020 Hb_000009_260 Hb_000009_260 Hb_004041_070--Hb_000009_260 Hb_012278_010 Hb_012278_010 Hb_004041_070--Hb_012278_010 Hb_004604_020 Hb_004604_020 Hb_004041_070--Hb_004604_020 Hb_004044_060 Hb_004044_060 Hb_004041_070--Hb_004044_060 Hb_102408_010--Hb_012278_010 Hb_102408_010--Hb_000009_260 Hb_102408_010--Hb_003793_020 Hb_000994_010 Hb_000994_010 Hb_102408_010--Hb_000994_010 Hb_001081_040 Hb_001081_040 Hb_102408_010--Hb_001081_040 Hb_003793_020--Hb_004604_020 Hb_003793_020--Hb_000009_260 Hb_047923_020 Hb_047923_020 Hb_003793_020--Hb_047923_020 Hb_003793_020--Hb_004044_060 Hb_000009_260--Hb_004044_060 Hb_000009_260--Hb_012278_010 Hb_004324_410 Hb_004324_410 Hb_000009_260--Hb_004324_410 Hb_034558_010 Hb_034558_010 Hb_012278_010--Hb_034558_010 Hb_128894_010 Hb_128894_010 Hb_012278_010--Hb_128894_010 Hb_007658_030 Hb_007658_030 Hb_012278_010--Hb_007658_030 Hb_004604_020--Hb_047923_020 Hb_004604_020--Hb_004044_060 Hb_004604_020--Hb_000009_260 Hb_000046_230 Hb_000046_230 Hb_004604_020--Hb_000046_230 Hb_128912_010 Hb_128912_010 Hb_004044_060--Hb_128912_010 Hb_004044_060--Hb_047923_020 Hb_001545_220 Hb_001545_220 Hb_004044_060--Hb_001545_220 Hb_004044_060--Hb_004324_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.136224 0 0 0.0255315 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0185188 0

CAGE analysis